Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_H13
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   154   2e-38
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   153   3e-38
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    27   4.7  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   6.2  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    26   8.2  

>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  154 bits (373), Expect = 2e-38
 Identities = 73/141 (51%), Positives = 94/141 (66%)
 Frame = +3

Query: 147 KRXVWLDPNAINEIANTNSRTETSVX*IKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 326
           KR VW+DPN I+EI+N NSR       IKDGLVI+KP  +HSR R+RK   A+R GRH G
Sbjct: 19  KRKVWMDPNEISEISNANSRQNVRKL-IKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTG 77

Query: 327 FGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRV 506
           +GKR+GTA ARMP   +W                + KID+HLYH+LY++AKGN FK+KR 
Sbjct: 78  YGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRA 137

Query: 507 LMEYIHRKKAEKARTXMLSDQ 569
           L+E+I R KAE  RT ++ +Q
Sbjct: 138 LIEHIQRAKAEANRTKLIQEQ 158


>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  153 bits (371), Expect = 3e-38
 Identities = 72/141 (51%), Positives = 94/141 (66%)
 Frame = +3

Query: 147 KRXVWLDPNAINEIANTNSRTETSVX*IKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 326
           KR VW+DPN I+EI+N NSR       +KDGLVI+KP  +HSR R+RK   A+R GRH G
Sbjct: 19  KRKVWMDPNEISEISNANSRQNIRKL-VKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTG 77

Query: 327 FGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRV 506
           +GKR+GTA ARMP   +W                + KID+HLYH+LY++AKGN FK+KR 
Sbjct: 78  YGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRA 137

Query: 507 LMEYIHRKKAEKARTXMLSDQ 569
           L+E+I R KAE  RT ++ +Q
Sbjct: 138 LIEHIQRAKAEANRTKLIQEQ 158


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
 Frame = -3

Query: 644 FLLLGGNT-----FLAALACLLYFIAAGL 573
           F+  GGN      FL A  C+LY I+AGL
Sbjct: 195 FIYRGGNVMNLQWFLIASTCILYLISAGL 223


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 375 VPSVAYAHWQYLFSYQS 325
           +PSV YA WQ L  Y S
Sbjct: 255 IPSVCYAAWQLLAKYDS 271


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +3

Query: 51  CFLVVALXSHRVRTAFPQXXXXXCSLCYAXVVKRXVWLDPNAINEIANTNS 203
           CFL +    H + + FP        L  A  VK+ + +D   + E   T+S
Sbjct: 445 CFLNIQYRMHELISKFPSDTFYDSKLVPAEEVKKRLLMDLENVEETELTDS 495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,273
Number of Sequences: 5004
Number of extensions: 50305
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)