Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_H12
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces...   136   5e-33
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe...   136   5e-33
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb...   136   5e-33
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    48   2e-06
SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1 |...    30   0.50 

>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score =  136 bits (328), Expect = 5e-33
 Identities = 65/78 (83%), Positives = 71/78 (91%)
 Frame = +2

Query: 149 KFSEHNIQGITKPAIRRLARRGGVKRISGLIYXETRXVLKVFLENVIRDAVTYTEHAKRK 328
           K    NIQGITKPAIRRLARRGGVKRIS L+Y ETR VLK+FLENVIRDAVTYTEHAKRK
Sbjct: 21  KILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRK 80

Query: 329 TVTAMDVVYALKRQGRTL 382
           TVT++DVVY+LKRQGRT+
Sbjct: 81  TVTSLDVVYSLKRQGRTI 98


>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score =  136 bits (328), Expect = 5e-33
 Identities = 65/78 (83%), Positives = 71/78 (91%)
 Frame = +2

Query: 149 KFSEHNIQGITKPAIRRLARRGGVKRISGLIYXETRXVLKVFLENVIRDAVTYTEHAKRK 328
           K    NIQGITKPAIRRLARRGGVKRIS L+Y ETR VLK+FLENVIRDAVTYTEHAKRK
Sbjct: 21  KILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRK 80

Query: 329 TVTAMDVVYALKRQGRTL 382
           TVT++DVVY+LKRQGRT+
Sbjct: 81  TVTSLDVVYSLKRQGRTI 98


>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score =  136 bits (328), Expect = 5e-33
 Identities = 65/78 (83%), Positives = 71/78 (91%)
 Frame = +2

Query: 149 KFSEHNIQGITKPAIRRLARRGGVKRISGLIYXETRXVLKVFLENVIRDAVTYTEHAKRK 328
           K    NIQGITKPAIRRLARRGGVKRIS L+Y ETR VLK+FLENVIRDAVTYTEHAKRK
Sbjct: 21  KILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRK 80

Query: 329 TVTAMDVVYALKRQGRTL 382
           TVT++DVVY+LKRQGRT+
Sbjct: 81  TVTSLDVVYSLKRQGRTI 98


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 22/74 (29%), Positives = 40/74 (54%)
 Frame = +2

Query: 149 KFSEHNIQGITKPAIRRLARRGGVKRISGLIYXETRXVLKVFLENVIRDAVTYTEHAKRK 328
           ++S+ +   + +  IR+LA     K+I+G +  E     ++F + +  D   + +HA RK
Sbjct: 377 RYSKSSTLVLPETNIRKLANSYSQKKIAGSVIEELTTASELFFKQIANDLSAFADHAHRK 436

Query: 329 TVTAMDVVYALKRQ 370
           T+   DVV  +KRQ
Sbjct: 437 TIDTQDVVLLMKRQ 450


>SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 190

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = -3

Query: 168 ILCSENFPVPFRASLPSSLSRL-YRDPSVVASAFQTSNRNGRKILRI 31
           I+ S N P+P  +S+PSS+  +   D S+V +A +T  R  R ++ +
Sbjct: 138 IVISVNAPLPNTSSVPSSVENIPPSDQSIVRAALETIQRVTRSLVLV 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,874,127
Number of Sequences: 5004
Number of extensions: 28873
Number of successful extensions: 64
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)