Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_H12
(881 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0780 - 20500344-20500655 142 3e-34
09_06_0213 - 21610887-21611198 142 3e-34
09_04_0227 + 15861410-15861721 142 3e-34
07_03_0825 + 21773710-21774021 142 3e-34
05_05_0150 + 22758060-22758371 142 3e-34
05_05_0128 - 22591720-22592031 142 3e-34
04_04_0926 - 29462363-29462674 142 3e-34
03_01_0134 + 1060551-1060862 142 3e-34
02_05_0333 - 28012829-28013140 142 3e-34
01_06_1262 + 35833882-35834193 142 3e-34
05_05_0130 - 22598744-22599043,22599296-22599307 120 1e-27
04_01_0619 - 8125611-8127967,8128449-8130123 29 4.9
>10_08_0780 - 20500344-20500655
Length = 103
Score = 142 bits (344), Expect = 3e-34
Identities = 70/78 (89%), Positives = 72/78 (92%)
Frame = +2
Query: 149 KFSEHNIQGITKPAIRRLARRGGVKRISGLIYXETRXVLKVFLENVIRDAVTYTEHAKRK 328
K NIQGITKPAIRRLARRGGVKRISGLIY ETR VLK+FLENVIRDAVTYTEHA+RK
Sbjct: 21 KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRK 80
Query: 329 TVTAMDVVYALKRQGRTL 382
TVTAMDVVYALKRQGRTL
Sbjct: 81 TVTAMDVVYALKRQGRTL 98
>09_06_0213 - 21610887-21611198
Length = 103
Score = 142 bits (344), Expect = 3e-34
Identities = 70/78 (89%), Positives = 72/78 (92%)
Frame = +2
Query: 149 KFSEHNIQGITKPAIRRLARRGGVKRISGLIYXETRXVLKVFLENVIRDAVTYTEHAKRK 328
K NIQGITKPAIRRLARRGGVKRISGLIY ETR VLK+FLENVIRDAVTYTEHA+RK
Sbjct: 21 KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRK 80
Query: 329 TVTAMDVVYALKRQGRTL 382
TVTAMDVVYALKRQGRTL
Sbjct: 81 TVTAMDVVYALKRQGRTL 98
>09_04_0227 + 15861410-15861721
Length = 103
Score = 142 bits (344), Expect = 3e-34
Identities = 70/78 (89%), Positives = 72/78 (92%)
Frame = +2
Query: 149 KFSEHNIQGITKPAIRRLARRGGVKRISGLIYXETRXVLKVFLENVIRDAVTYTEHAKRK 328
K NIQGITKPAIRRLARRGGVKRISGLIY ETR VLK+FLENVIRDAVTYTEHA+RK
Sbjct: 21 KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRK 80
Query: 329 TVTAMDVVYALKRQGRTL 382
TVTAMDVVYALKRQGRTL
Sbjct: 81 TVTAMDVVYALKRQGRTL 98
>07_03_0825 + 21773710-21774021
Length = 103
Score = 142 bits (344), Expect = 3e-34
Identities = 70/78 (89%), Positives = 72/78 (92%)
Frame = +2
Query: 149 KFSEHNIQGITKPAIRRLARRGGVKRISGLIYXETRXVLKVFLENVIRDAVTYTEHAKRK 328
K NIQGITKPAIRRLARRGGVKRISGLIY ETR VLK+FLENVIRDAVTYTEHA+RK
Sbjct: 21 KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRK 80
Query: 329 TVTAMDVVYALKRQGRTL 382
TVTAMDVVYALKRQGRTL
Sbjct: 81 TVTAMDVVYALKRQGRTL 98
>05_05_0150 + 22758060-22758371
Length = 103
Score = 142 bits (344), Expect = 3e-34
Identities = 70/78 (89%), Positives = 72/78 (92%)
Frame = +2
Query: 149 KFSEHNIQGITKPAIRRLARRGGVKRISGLIYXETRXVLKVFLENVIRDAVTYTEHAKRK 328
K NIQGITKPAIRRLARRGGVKRISGLIY ETR VLK+FLENVIRDAVTYTEHA+RK
Sbjct: 21 KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRK 80
Query: 329 TVTAMDVVYALKRQGRTL 382
TVTAMDVVYALKRQGRTL
Sbjct: 81 TVTAMDVVYALKRQGRTL 98
>05_05_0128 - 22591720-22592031
Length = 103
Score = 142 bits (344), Expect = 3e-34
Identities = 70/78 (89%), Positives = 72/78 (92%)
Frame = +2
Query: 149 KFSEHNIQGITKPAIRRLARRGGVKRISGLIYXETRXVLKVFLENVIRDAVTYTEHAKRK 328
K NIQGITKPAIRRLARRGGVKRISGLIY ETR VLK+FLENVIRDAVTYTEHA+RK
Sbjct: 21 KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRK 80
Query: 329 TVTAMDVVYALKRQGRTL 382
TVTAMDVVYALKRQGRTL
Sbjct: 81 TVTAMDVVYALKRQGRTL 98
>04_04_0926 - 29462363-29462674
Length = 103
Score = 142 bits (344), Expect = 3e-34
Identities = 70/78 (89%), Positives = 72/78 (92%)
Frame = +2
Query: 149 KFSEHNIQGITKPAIRRLARRGGVKRISGLIYXETRXVLKVFLENVIRDAVTYTEHAKRK 328
K NIQGITKPAIRRLARRGGVKRISGLIY ETR VLK+FLENVIRDAVTYTEHA+RK
Sbjct: 21 KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRK 80
Query: 329 TVTAMDVVYALKRQGRTL 382
TVTAMDVVYALKRQGRTL
Sbjct: 81 TVTAMDVVYALKRQGRTL 98
>03_01_0134 + 1060551-1060862
Length = 103
Score = 142 bits (344), Expect = 3e-34
Identities = 70/78 (89%), Positives = 72/78 (92%)
Frame = +2
Query: 149 KFSEHNIQGITKPAIRRLARRGGVKRISGLIYXETRXVLKVFLENVIRDAVTYTEHAKRK 328
K NIQGITKPAIRRLARRGGVKRISGLIY ETR VLK+FLENVIRDAVTYTEHA+RK
Sbjct: 21 KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRK 80
Query: 329 TVTAMDVVYALKRQGRTL 382
TVTAMDVVYALKRQGRTL
Sbjct: 81 TVTAMDVVYALKRQGRTL 98
>02_05_0333 - 28012829-28013140
Length = 103
Score = 142 bits (344), Expect = 3e-34
Identities = 70/78 (89%), Positives = 72/78 (92%)
Frame = +2
Query: 149 KFSEHNIQGITKPAIRRLARRGGVKRISGLIYXETRXVLKVFLENVIRDAVTYTEHAKRK 328
K NIQGITKPAIRRLARRGGVKRISGLIY ETR VLK+FLENVIRDAVTYTEHA+RK
Sbjct: 21 KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRK 80
Query: 329 TVTAMDVVYALKRQGRTL 382
TVTAMDVVYALKRQGRTL
Sbjct: 81 TVTAMDVVYALKRQGRTL 98
>01_06_1262 + 35833882-35834193
Length = 103
Score = 142 bits (344), Expect = 3e-34
Identities = 70/78 (89%), Positives = 72/78 (92%)
Frame = +2
Query: 149 KFSEHNIQGITKPAIRRLARRGGVKRISGLIYXETRXVLKVFLENVIRDAVTYTEHAKRK 328
K NIQGITKPAIRRLARRGGVKRISGLIY ETR VLK+FLENVIRDAVTYTEHA+RK
Sbjct: 21 KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRK 80
Query: 329 TVTAMDVVYALKRQGRTL 382
TVTAMDVVYALKRQGRTL
Sbjct: 81 TVTAMDVVYALKRQGRTL 98
>05_05_0130 - 22598744-22599043,22599296-22599307
Length = 103
Score = 120 bits (290), Expect = 1e-27
Identities = 58/72 (80%), Positives = 64/72 (88%)
Frame = +2
Query: 167 IQGITKPAIRRLARRGGVKRISGLIYXETRXVLKVFLENVIRDAVTYTEHAKRKTVTAMD 346
IQGI KP IRRLAR+GGVKRISGLIY ETR VL++FL+NVI DA+TYTEHA RKTV AMD
Sbjct: 27 IQGIAKPVIRRLARKGGVKRISGLIYKETRGVLEIFLKNVICDAITYTEHAHRKTVMAMD 86
Query: 347 VVYALKRQGRTL 382
VVYALK QGRT+
Sbjct: 87 VVYALKLQGRTI 98
>04_01_0619 - 8125611-8127967,8128449-8130123
Length = 1343
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 169 SRNNEACHSKIGATRRRQTYIRPDLRXNTXRSKGFSRERYPGRGYLHRAR 318
+ NN + S+ T Q+Y R + RSK R R+PG+ + R R
Sbjct: 553 NNNNFSAASRAAVTS--QSYAAASWRSHPSRSKAARRRRWPGQAWSQRMR 600
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,561,659
Number of Sequences: 37544
Number of extensions: 197287
Number of successful extensions: 462
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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