Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_H12
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.          138   5e-35
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   8.6  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score =  138 bits (335), Expect = 5e-35
 Identities = 69/73 (94%), Positives = 69/73 (94%)
 Frame = +2

Query: 164 NIQGITKPAIRRLARRGGVKRISGLIYXETRXVLKVFLENVIRDAVTYTEHAKRKTVTAM 343
           NIQGITKPAIRRLARRGGVKRISGLIY ETR VLKVFLENVIRDAVTYTEH KRKTVTAM
Sbjct: 26  NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHTKRKTVTAM 85

Query: 344 DVVYALKRQGRTL 382
           DVVYALK QGRTL
Sbjct: 86  DVVYALKIQGRTL 98


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3

Query: 147 PVPFRASLPSSLSRLYRDPSVVASAFQTSNRNG 49
           P P  AS PSS +         A+A Q S RNG
Sbjct: 513 PNPRIASAPSSSTSSSPPAKGAAAAGQPSKRNG 545


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 492 LCGPEKGLCQSARQKKTTAIDKFI 421
           LC  + GLC + +  K T + K++
Sbjct: 492 LCDGKPGLCDAMKPTKGTELLKYL 515


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,902
Number of Sequences: 438
Number of extensions: 2368
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)