Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_H11
(933 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592... 32 0.75
11_01_0706 + 5811722-5814025 29 4.0
10_08_0296 - 16595193-16595222,16595923-16596067,16597387-165974... 29 4.0
09_02_0342 + 7464679-7464691,7466689-7468136 29 4.0
03_05_0275 + 22628452-22628694,22630181-22630386,22631368-226316... 29 4.0
12_02_0966 - 24906361-24906958,24907084-24907250,24907403-249076... 29 5.3
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 29 5.3
10_01_0105 + 1287423-1289924 29 5.3
04_04_1404 + 33302080-33303341,33303435-33305307 29 5.3
05_05_0057 + 21995018-21997006 29 7.0
02_05_0280 + 27435166-27435254,27436348-27436437,27436764-274368... 29 7.0
12_02_0552 + 20333744-20334114,20334241-20335942 28 9.2
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539 28 9.2
07_03_0859 + 22054087-22055421 28 9.2
>09_04_0042 -
14055885-14056142,14057508-14057774,14057859-14059292,
14059378-14059539,14059642-14059768,14059869-14060200,
14060289-14061083,14061379-14061714,14061791-14062730,
14063338-14063588
Length = 1633
Score = 31.9 bits (69), Expect = 0.75
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +3
Query: 540 RSLVLENSHRHCTGYSG*EAEGGSRRRANGESSPR 644
RS+V ++H+H G G + +G +RRR GE +PR
Sbjct: 9 RSIVASHAHQHKGG--GGDGDGEARRRYQGEGAPR 41
>11_01_0706 + 5811722-5814025
Length = 767
Score = 29.5 bits (63), Expect = 4.0
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = -3
Query: 412 GHIERVDCNAADLLGPVV-GRRKPSVASISYLKY 314
G++ R++ + A L G V+ GR PS+AS+ +L+Y
Sbjct: 3 GNVIRLELSEASLGGQVLQGRMSPSLASLEHLEY 36
>10_08_0296 -
16595193-16595222,16595923-16596067,16597387-16597488,
16597630-16597685,16598245-16598399,16598755-16598918,
16599116-16599237,16599542-16599754,16599874-16600023,
16600909-16600959
Length = 395
Score = 29.5 bits (63), Expect = 4.0
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 203 LRDSLPK-YAELQTQLLLANLNDSRLDNEEDLLEHSRAILQVADRCDGW 346
+ +S+P+ Y E +L+L D L N+E + + L+V DRC W
Sbjct: 258 ITESIPRSYIEFAERLVLPQFKD--LPNDEQQFKAAFCYLEVQDRCVRW 304
>09_02_0342 + 7464679-7464691,7466689-7468136
Length = 486
Score = 29.5 bits (63), Expect = 4.0
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -2
Query: 215 RSLLGARTPLCPVPASVAGSIDSXFCVGGFHYFPFYKI 102
RS G+ P C +P + C+G H+ PFY +
Sbjct: 26 RSRTGSNRPECKIPLLCPPQRPAAVCIGPNHHNPFYHL 63
>03_05_0275 +
22628452-22628694,22630181-22630386,22631368-22631659,
22632707-22632814,22632972-22633222,22633316-22633357,
22634478-22634601,22634786-22634851,22635734-22635910
Length = 502
Score = 29.5 bits (63), Expect = 4.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 460 VRGDPVGYGADEGLDGGHIERVDCNAADLLGPV 362
++ + +G G D+G GG I V C+ A +L V
Sbjct: 441 IKMELIGLGQDQGAHGGRIPNVRCSPAAILSAV 473
>12_02_0966 -
24906361-24906958,24907084-24907250,24907403-24907650,
24907824-24908001,24908196-24908372,24908459-24908563,
24908633-24908770,24909757-24910836
Length = 896
Score = 29.1 bits (62), Expect = 5.3
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +3
Query: 342 DGFRLPTTGPRRSAALQSTLSICPPSRPSSAPYPTGSPLTVV 467
DG LP + PR S + + S P+S P PT PL VV
Sbjct: 14 DGPPLPYSLPRAIPLDLSRIPLASLSSPTSPPPPTAPPLPVV 55
>10_08_0630 -
19410852-19411235,19411370-19412257,19412440-19412941,
19413662-19414135,19414982-19415040,19415468-19415629
Length = 822
Score = 29.1 bits (62), Expect = 5.3
Identities = 23/71 (32%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Frame = +3
Query: 411 PPSRP----SSAPYPTGSPLTVVE*RVSSYHRSLLVSP-PEFSQTHSPRSLVLENSHRHC 575
PPS P S AP P P S SP P QT S +V+ + H
Sbjct: 434 PPSHPTPITSVAPAPPPPPPAAAAAAASQPSPQATKSPLPATPQTQSSMDIVMTAAEAHD 493
Query: 576 TGYSG*EAEGG 608
GY G GG
Sbjct: 494 AGYDGSGGGGG 504
>10_01_0105 + 1287423-1289924
Length = 833
Score = 29.1 bits (62), Expect = 5.3
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -3
Query: 412 GHIERVDCNA-ADLLGPVVGRRKPSVASISYLKY 314
GH+ ++D N+ P+VG+ PS+ S++YL+Y
Sbjct: 77 GHVVKLDVNSFLTDDSPMVGQISPSLLSLNYLQY 110
>04_04_1404 + 33302080-33303341,33303435-33305307
Length = 1044
Score = 29.1 bits (62), Expect = 5.3
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
Frame = +3
Query: 357 PTTGPRRSAALQSTLSICPPSRPSSAPYPTGSPLTVVE*RVSSYHRSLLVSPPEFSQTHS 536
P + PR A +++ + P+S P + + + R L+SPP +S
Sbjct: 359 PPSPPRGGGAARASSRRPEGAAPTSQPEGERKKKRLRKTGETEPCRGNLISPPRWSFNRP 418
Query: 537 PRSLVLENSHRH-CTGYSG*EAEGGSRRRANGESSPRSIYRPLLLDSETRQRLSA 698
PRS V +S RH +G S EAE + S R L ++E R +A
Sbjct: 419 PRSDVPSHSSRHPKSGQS--EAEDPTAAEERRRESDRREAADRLREAEEAAREAA 471
>05_05_0057 + 21995018-21997006
Length = 662
Score = 28.7 bits (61), Expect = 7.0
Identities = 24/69 (34%), Positives = 33/69 (47%)
Frame = -3
Query: 631 SPFALLRLPPSASQPEYPVQWRWLFSRTRXRGECV*ENSGGDTSSDR**ELTLYSTTVRG 452
S A +PP PE P + +L R+R RGE E +GG S D +L + +
Sbjct: 282 SKAAAAAMPP----PEKPSKPSFL-RRSRLRGEACSEFAGGRRSCDTDPRFSLDAGRMSV 336
Query: 451 DPVGYGADE 425
D VG+ DE
Sbjct: 337 DDVGFSWDE 345
>02_05_0280 +
27435166-27435254,27436348-27436437,27436764-27436866,
27437318-27437377,27437745-27439148,27439227-27439328,
27439424-27439609,27439695-27439820,27439905-27440000,
27440509-27440574
Length = 773
Score = 28.7 bits (61), Expect = 7.0
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 327 LIDATDGFRLPTTGPRRSAALQSTLSICPPSRPSSAPYPTGS 452
L+ G +LPT LQ +LS+C P + S +P+GS
Sbjct: 463 LVGLVSGCQLPTY------TLQDSLSVCKPQQEPSLDFPSGS 498
>12_02_0552 + 20333744-20334114,20334241-20335942
Length = 690
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 484 ELTLYSTTVRGDPVGYG-ADEGLDGGHIERVDCNAADLLGPVV 359
E L + GDP+ +G A EGL G H++ V + P+V
Sbjct: 4 ETGLVDRPLNGDPLYWGKAAEGLAGSHLDEVKRMVVEYRAPLV 46
>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
Length = 1908
Score = 28.3 bits (60), Expect = 9.2
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = -3
Query: 622 ALLRLPPSASQPEYPVQWRWL 560
ALLR PP A PE P Q RWL
Sbjct: 87 ALLRHPPVAHDPESPAQ-RWL 106
>07_03_0859 + 22054087-22055421
Length = 444
Score = 28.3 bits (60), Expect = 9.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 372 RRSAALQSTLSICPPSRPSSAPYPTGSPLTVV 467
RR AA + + P +RP+ P PT PL V+
Sbjct: 21 RRRAAKPNAATPSPAARPAPTPTPTPPPLAVL 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,580,907
Number of Sequences: 37544
Number of extensions: 523879
Number of successful extensions: 1748
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1748
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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