Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_H10
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    27   4.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   4.5  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   6.0  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    26   7.9  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   7.9  

>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 22/78 (28%), Positives = 31/78 (39%)
 Frame = -2

Query: 314 NLSVPYTNTAPHKNPPATGTNAYFPSSPYVSHISMAGFNSDQ*EAAVMTPAANPNDKSSS 135
           N  VP T T    +  A+ T+  +P +   S  S +  ++     +  TP       SSS
Sbjct: 49  NGPVPGTTTIYPTSNVASNTSENYPYTGSKSLSSSSILSNSTISTSSSTPITASVPTSSS 108

Query: 134 FLCFPLIKNTQPAPTAVS 81
            L    I  T P PT  S
Sbjct: 109 ILSNSTIPTTSPVPTTSS 126


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -2

Query: 308 SVPYTNTAPHKNPPATGTNAYFPSS-PYVS-HISMAGFNSDQ*EAAVMTPAANPNDKSSS 135
           S+PYT+T P  + P T TN    +S PY S  ++ + +          TP    N  +S+
Sbjct: 478 SIPYTST-PVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTST 536

Query: 134 FLCF 123
            + +
Sbjct: 537 SVLY 540



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
 Frame = -2

Query: 308 SVPYTNTAPHKNPPATGTNAYFPSSPYVS-HISMAGFNSDQ*EAAVMTPAANPNDKSSSF 132
           SV YT+T     P AT       S PY S  ++ + +          TP    N  +S+ 
Sbjct: 537 SVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTS 596

Query: 131 LCFPLIKNTQPAPTAVS 81
           + +     T P  T+ S
Sbjct: 597 VLYTSTPITSPNSTSSS 613


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +1

Query: 190 WSLLKPAIEMCDTYGEDGKYAFVPV---AGGFLCGAVFVYGTDRFLDYLGINSTN 345
           WS+ KP   +   + + GK   + +    GG +CG  FV+  DR      +NS N
Sbjct: 116 WSIKKPQ-HLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLN 169


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -2

Query: 281 HKNPPATGTNAYFPSSPYVSHISMAGFNSDQ*EAAVMTPAANPNDKSSSFL-CFPLIKNT 105
           HKN      ++   +S +  +ISM   NS+    A+    A   +K+   + C P  K  
Sbjct: 494 HKNTSVANVSSKVANSKFERNISMMS-NSNASSPAIFEVGAEAKEKTKDAIPCHPDDKLM 552

Query: 104 QPAPTAVS 81
            P+P  V+
Sbjct: 553 IPSPKIVT 560


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/65 (23%), Positives = 30/65 (46%)
 Frame = -2

Query: 284 PHKNPPATGTNAYFPSSPYVSHISMAGFNSDQ*EAAVMTPAANPNDKSSSFLCFPLIKNT 105
           P K      T++  P++      +  G  S Q  +A  +PA +P++++S    F    +T
Sbjct: 422 PEKPALPDATSSSTPTTENKESWTNQGIKSSQQRSANASPATSPSNQASIHASFTKESST 481

Query: 104 QPAPT 90
             +P+
Sbjct: 482 HSSPS 486


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,125,163
Number of Sequences: 5004
Number of extensions: 58739
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)