Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_H10
         (861 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0273 - 28857212-28857294,28857404-28858169                       32   0.68 
02_03_0285 - 17296164-17296203,17296406-17296524,17296572-172967...    29   3.6  
05_03_0473 - 14469110-14469232,14470246-14470452,14471034-14471441     28   8.3  

>05_07_0273 - 28857212-28857294,28857404-28858169
          Length = 282

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
 Frame = +1

Query: 316 LDYLGINSTNMMISITKSKDSKEKLEDLEMMTALNR----RPSVPTSVVTMESPQPAEFA 483
           LD+  +   +   S++ S DS +   DL+ + +L+R     PS  T      + +P+  A
Sbjct: 44  LDFSSVRGASSSGSMSGSDDSDDDCTDLDFIISLHRSRSASPSYDTLFFAAAASEPSTKA 103

Query: 484 DCITNQHTAQRRRGHQSHNSLKIG 555
               + H   +RRG     +L  G
Sbjct: 104 SFQPSHHFCAKRRGGGGLRTLSFG 127


>02_03_0285 -
           17296164-17296203,17296406-17296524,17296572-17296742,
           17298878-17298985,17299783-17299905,17300057-17300143,
           17300765-17300884
          Length = 255

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
 Frame = +1

Query: 145 LSLGFAAGVMTAASYWSLLKPAIEMCDTYGEDGKYAFVPVAGGFLCGAVFVYGTDR---- 312
           L +G     +T A    +L P       Y E   + F+     F+C   FV+ TD+    
Sbjct: 166 LKMGEGMKALTDAHLCRMLCPDWPKA-CYREGAAHMFLKAKSFFICNNYFVFRTDKACDA 224

Query: 313 FLDYLGINSTNMMI 354
           FLD L ++  NM I
Sbjct: 225 FLDGLKLDPANMEI 238


>05_03_0473 - 14469110-14469232,14470246-14470452,14471034-14471441
          Length = 245

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
 Frame = +1

Query: 109 FFIRGKHRKLLDLSLGFAAGVMTAASYWSLLKPAIEMCDTYGEDGKYAFVPVAGGF---L 279
           FF      +   L  G AAGVM AAS+       ++    YG      F  ++GGF   L
Sbjct: 79  FFFLELEAQWAGLCNGLAAGVMLAASF-----DLVQEGQMYGSGSWVVFGILSGGFFIWL 133

Query: 280 CGAVF-VYGTDRFLDYLGINSTNMMISI 360
           C      YG    LD  G +++ +++ +
Sbjct: 134 CKKFLEQYGEVSMLDIKGADASKVILVV 161


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,314,026
Number of Sequences: 37544
Number of extensions: 421316
Number of successful extensions: 1060
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)