Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_H10
(861 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80448-2|AAB37816.1| 321|Caenorhabditis elegans Hypothetical pr... 101 5e-22
U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon gu... 29 3.2
U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon gu... 29 3.2
AF125956-6|AAD14727.2| 158|Caenorhabditis elegans Serpentine re... 29 3.2
AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein. 29 3.2
Z99281-43|CAJ76962.1| 257|Caenorhabditis elegans Hypothetical p... 28 9.8
Z99281-42|CAB16505.2| 269|Caenorhabditis elegans Hypothetical p... 28 9.8
Z81523-5|CAB04240.2| 298|Caenorhabditis elegans Hypothetical pr... 28 9.8
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu... 28 9.8
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein. 28 9.8
>U80448-2|AAB37816.1| 321|Caenorhabditis elegans Hypothetical
protein F59A3.4 protein.
Length = 321
Score = 101 bits (243), Expect = 5e-22
Identities = 88/252 (34%), Positives = 119/252 (47%)
Frame = +1
Query: 106 VFFIRGKHRKLLDLSLGFAAGVMTAASYWSLLKPAIEMCDTYGEDGKYAFVPVAGGFLCG 285
VF +R + +KLLD+SLGFAAGVMTAAS+WSLL PAIE+ + E K+AFVPVA GF G
Sbjct: 29 VFIMRHQSKKLLDISLGFAAGVMTAASFWSLLAPAIEIAEADFE--KWAFVPVAIGFAVG 86
Query: 286 AVFVYGTDRFLDYLGINSTNMMISITKSKDSKEKLEDLEMMTALNRRPSVPTSVVTMESP 465
A FV+ D L + M + S ++ ++ +M A E
Sbjct: 87 AGFVHLADTLLPSC-VGDAGMTSLL--SPPTRRSETEMSLMQA-------------REDL 130
Query: 466 QPAEFADCITNQHTAQRRRGHQSHNSLKIGXNGKXDHRDSISKSLEAPQSQWKRIVLLVX 645
A A + +H + R S+ +G D R + + QS W+RI+LL+
Sbjct: 131 DVAALARSVNEEHRERDR-------SVDMG----SDKRPDVIPEEDYRQS-WRRILLLIL 178
Query: 646 PXXXPXYT*RXWLLASRLGAXAPNDKAMFXSSRNXGFGXXXXXXFPRGLXXSLPLQAAGF 825
+ G+ +A F S+ N G FP GL SLPL A G
Sbjct: 179 AVTVHNIP-EGLAVGVGFGSAGKTKQATFESAFNLAIG-IGLQNFPEGLAVSLPLAAFGH 236
Query: 826 SVWRAFXYGQLS 861
S +AF YGQLS
Sbjct: 237 SKLKAFWYGQLS 248
>U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon
guidance protein 3,isoform b protein.
Length = 1273
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/63 (34%), Positives = 31/63 (49%)
Frame = +1
Query: 421 RRPSVPTSVVTMESPQPAEFADCITNQHTAQRRRGHQSHNSLKIGXNGKXDHRDSISKSL 600
R P++PT+ V E P A +AD HTA RR + + NG HR S S+
Sbjct: 1032 RAPAMPTNPVPPEPP--ARYAD-----HTAGRRSRSSRASDGRGTLNGGLHHRTSGSQRS 1084
Query: 601 EAP 609
++P
Sbjct: 1085 DSP 1087
>U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon
guidance protein 3,isoform a protein.
Length = 1269
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/63 (34%), Positives = 31/63 (49%)
Frame = +1
Query: 421 RRPSVPTSVVTMESPQPAEFADCITNQHTAQRRRGHQSHNSLKIGXNGKXDHRDSISKSL 600
R P++PT+ V E P A +AD HTA RR + + NG HR S S+
Sbjct: 1032 RAPAMPTNPVPPEPP--ARYAD-----HTAGRRSRSSRASDGRGTLNGGLHHRTSGSQRS 1084
Query: 601 EAP 609
++P
Sbjct: 1085 DSP 1087
>AF125956-6|AAD14727.2| 158|Caenorhabditis elegans Serpentine
receptor, class h protein77 protein.
Length = 158
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 247 YAFVPVAGGFLCGAVFVYGTDRFLD-YLGI-NSTNMMISIT 363
Y FVP GF G + +G F+ +LGI N+ M++S+T
Sbjct: 86 YIFVPTLSGFAVGLLQYFGVSLFVQLWLGIANACVMVLSMT 126
>AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.
Length = 1273
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/63 (34%), Positives = 31/63 (49%)
Frame = +1
Query: 421 RRPSVPTSVVTMESPQPAEFADCITNQHTAQRRRGHQSHNSLKIGXNGKXDHRDSISKSL 600
R P++PT+ V E P A +AD HTA RR + + NG HR S S+
Sbjct: 1032 RAPAMPTNPVPPEPP--ARYAD-----HTAGRRSRSSRASDGRGTLNGGLHHRTSGSQRS 1084
Query: 601 EAP 609
++P
Sbjct: 1085 DSP 1087
>Z99281-43|CAJ76962.1| 257|Caenorhabditis elegans Hypothetical
protein Y57G11C.3b protein.
Length = 257
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 304 TDRF-LDYLGINSTNMMISITKSKDSKEKLEDLEMMTALNRRPSVPTSVVTM 456
T RF + +LG+ SI K+ EK+ +L ++ + P P S +T+
Sbjct: 132 TARFDILFLGVGPDGHTASIFPGKERLEKITELNWVSVITDSPKPPPSRITL 183
>Z99281-42|CAB16505.2| 269|Caenorhabditis elegans Hypothetical
protein Y57G11C.3a protein.
Length = 269
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 304 TDRF-LDYLGINSTNMMISITKSKDSKEKLEDLEMMTALNRRPSVPTSVVTM 456
T RF + +LG+ SI K+ EK+ +L ++ + P P S +T+
Sbjct: 144 TARFDILFLGVGPDGHTASIFPGKERLEKITELNWVSVITDSPKPPPSRITL 195
>Z81523-5|CAB04240.2| 298|Caenorhabditis elegans Hypothetical
protein F32H2.4 protein.
Length = 298
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -3
Query: 460 IPSSRHSSVPTVACSKRSSFPNLLISLS---SLCFW 362
+ SS SSV VACS++ PNL S S ++C W
Sbjct: 42 VGSSHSSSVEQVACSEKQ--PNLFASASADRNICVW 75
>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
guidance protein 2,isoform a protein.
Length = 2886
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/65 (20%), Positives = 36/65 (55%)
Frame = -2
Query: 275 NPPATGTNAYFPSSPYVSHISMAGFNSDQ*EAAVMTPAANPNDKSSSFLCFPLIKNTQPA 96
+PP+ ++ +S + +HIS++ N+ +++++ +++P+ + S P +
Sbjct: 700 SPPSCHSSHVTSNSTHSTHISVSFPNTVTSASSILSNSSSPHQPTPSLCSLPESSSLHSI 759
Query: 95 PTAVS 81
PTA++
Sbjct: 760 PTAMT 764
>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
Length = 2914
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/65 (20%), Positives = 36/65 (55%)
Frame = -2
Query: 275 NPPATGTNAYFPSSPYVSHISMAGFNSDQ*EAAVMTPAANPNDKSSSFLCFPLIKNTQPA 96
+PP+ ++ +S + +HIS++ N+ +++++ +++P+ + S P +
Sbjct: 700 SPPSCHSSHVTSNSTHSTHISVSFPNTVTSASSILSNSSSPHQPTPSLCSLPESSSLHSI 759
Query: 95 PTAVS 81
PTA++
Sbjct: 760 PTAMT 764
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,545,834
Number of Sequences: 27780
Number of extensions: 347022
Number of successful extensions: 1045
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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