Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_H09
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.39 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.39 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.7  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 512 PKXXPPXPXGGGXFXXXKXXPPPPPXXXKKKK 417
           P   PP P   G     +  PPPPP   KK+K
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = -2

Query: 512 PKXXPPXPXGGGXFXXXKXXPPPPPXXXKKKK 417
           P   PP P     F      PPPPP    KK+
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 16/46 (34%), Positives = 17/46 (36%)
 Frame = +3

Query: 477 PPPPGXXGXXFXXPXPXPPXKXPXPGFXGGGXXFXPPXGGXXVXPK 614
           PPPP   G     P P PP   P P    GG  +  P       PK
Sbjct: 762 PPPPPPPGVAGAGPPPPPP---PPPAVSAGGSRYYAPAPQAEPEPK 804



 Score = 29.1 bits (62), Expect = 0.89
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +1

Query: 478 PPPXGXGGXXXGPXXXXPPKXPPXPGXGGGGGXXXPP 588
           P P         P    PP  PP PG  G G    PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = -3

Query: 586 GGXKXXPPPXNPGXGXFXGGXGXGXXKXXPXXPGGG 479
           GG    PPP   G G F G  G G         GGG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,645,292
Number of Sequences: 5004
Number of extensions: 19237
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)