Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_H08
         (906 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       25   1.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   3.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   3.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   3.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   3.3  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   7.6  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +2

Query: 488 TSVENNITSQALKRGIEQ-QPRGKMLGGSGSLNHMVYARGF-PSELPRMGLNRRRNLELD 661
           +S  NN+ S+  K    + Q  G+  G +   N  +  + + P  LP +     +N E+D
Sbjct: 98  SSFGNNLHSEKAKFNESKWQDSGESPGFTTERNWEIREKPYTPPRLPTVYGKPEQNYEVD 157

Query: 662 QRAQIFHENRAH 697
           + A +    R H
Sbjct: 158 ESASVMTNGRIH 169


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 626 MGLNRRRNLELDQRAQIFHENRAHDGYEH 712
           +G+NRRR+ E D + +   E +   G E+
Sbjct: 510 LGMNRRRDDEADVKTEDLDEIQKEKGDEY 538


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 626 MGLNRRRNLELDQRAQIFHENRAHDGYEH 712
           +G+NRRR+ E D + +   E +   G E+
Sbjct: 510 LGMNRRRDDEADVKTEDLDEIQKEKGDEY 538


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 626 MGLNRRRNLELDQRAQIFHENRAHDGYEH 712
           +G+NRRR+ E D + +   E +   G E+
Sbjct: 510 LGMNRRRDDEADVKTEDLDEIQKEKGDEY 538


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 626 MGLNRRRNLELDQRAQIFHENRAHDGYEH 712
           +G+NRRR+ E D + +   E +   G E+
Sbjct: 510 LGMNRRRDDEADVKTEDLDEIQKEKGDEY 538


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 551 GKMLGGSGSLNHMVYARGFPSELPRMGLN 637
           G   GGS S   M Y +  P  +P +GL+
Sbjct: 21  GSTCGGSSS--SMAYLKSAPYPVPGLGLH 47


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,032
Number of Sequences: 336
Number of extensions: 4862
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25237652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)