Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_H08
(906 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 29 0.69
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa... 28 2.1
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 27 3.7
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom... 27 3.7
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe... 27 4.8
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.4
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom... 26 6.4
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 26 6.4
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom... 26 8.5
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c... 26 8.5
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 26 8.5
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 26 8.5
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 29.5 bits (63), Expect = 0.69
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +1
Query: 568 KRLLESHGLCQGFSFRTTTNGPQSPEKLG 654
KRLL+ HG GFS TT P++ EK G
Sbjct: 36 KRLLKDHGDKLGFSVSHTTRTPRAGEKDG 64
>SPCC1753.03c |rec7||meiotic recombination protein Rec7
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 339
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -2
Query: 782 SFVPETSIAPPRXVVHXXFWIVNNVRIRHVLGFHEIFEHVGPVPSFSGD*G 630
S++P T A V+ VN ++HV+ EIF + P+ F GD G
Sbjct: 165 SYIPMTQTATT--AVNNSTNYVNPAPLQHVMPNAEIFSNTPPLKRFRGDAG 213
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 27.1 bits (57), Expect = 3.7
Identities = 20/75 (26%), Positives = 29/75 (38%)
Frame = -2
Query: 830 PSSSNACRNFLMENITSFVPETSIAPPRXVVHXXFWIVNNVRIRHVLGFHEIFEHVGPVP 651
P+S+ CRN +PET I P + + I N+ + VG V
Sbjct: 365 PNSNGLCRNDSKCRFLMILPETIIKSPSSFIGDSYNIA-NIDPPSSMNVQSSEFRVGEVQ 423
Query: 650 SFSGD*GPFVVVLKE 606
SF+ + F KE
Sbjct: 424 SFTTNTSSFAFTFKE 438
>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 464
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 314 YDFIIVGAGTAGSALAARLSEVANFSVLLLEAGG 415
+D++++G G+ G A A R ++ V L+EA G
Sbjct: 8 FDYLVIGGGSGGLASARRAAK-HGAKVALIEASG 40
>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 323 IIVGAGTAGSALAARLSEVANFSVLLLEAGGDPPIE 430
IIVGAG G + A L++ +++ +L+ P I+
Sbjct: 8 IIVGAGVFGLSAALELTKRGGYTIKILDRAPPPVID 43
>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 582 ITWSMPGVFLQNYHEWASIAGETWNWTNVLKYFMKTEHMTDT 707
+ W+ ++ N H+W I G TW T L + + + DT
Sbjct: 94 LPWNQRALYYFNEHKWPIILG-TWASTMGLSLYAASRNRYDT 134
>SPBP16F5.05c |||ribosome biogenesis protein
Nop8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 362 ARLSEVANFSVLLLEAGGDPPIEAI 436
A L+ A LLLEAGGDP I+ I
Sbjct: 78 AALNGHAEICKLLLEAGGDPHIKNI 102
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 422 VDLRPPPVGVR*SWQPRRVWRRAQSQ 345
VD+ PP V S+ RR WRR++SQ
Sbjct: 323 VDVDPPIVEEHSSFFRRRRWRRSRSQ 348
>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 453
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 463 SKFGRLEFYQRGKQYYKPSLKKRNRATTSREDAGWKRLLES 585
S GR+E + G+Q+Y+ + N +T + A +R+++S
Sbjct: 128 SSSGRVELFDMGRQFYERYHELFNASTYNIYTAAQQRVVDS 168
>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 311 RYDFIIVGAGTAGSALAARL 370
++D +IVG+G G ALAA L
Sbjct: 24 QFDVVIVGSGPVGLALAAGL 43
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 234 ADENRPPAAPLPRHEVNPQTISRIPFI 154
A+ + P + PLP N T+SR P+I
Sbjct: 365 ANTSYPVSVPLPNDAENNHTLSRNPYI 391
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 25.8 bits (54), Expect = 8.5
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Frame = +2
Query: 422 PIEAIIPAF-RETLKASSVDWNFTSVE-NNITSQALKRGIEQQPRGKMLGGSGSLNHMVY 595
P A++ AF ET+ + F N Q + + +G GGS S N +
Sbjct: 244 PWIALVSAFVAETMTLCCIVTIFYDKNVNRQWKQYILTSVSNMDKGNPSGGSQSTNVTTF 303
Query: 596 ARGFPSELPRMGLNRRR 646
R S PR RRR
Sbjct: 304 RRFSQSSYPRRSNYRRR 320
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,775,391
Number of Sequences: 5004
Number of extensions: 81185
Number of successful extensions: 224
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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