Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_H08
         (906 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC034502-1|AAH34502.1|  594|Homo sapiens choline dehydrogenase p...    59   3e-08
AJ272267-1|CAB75961.1|  482|Homo sapiens choline dehydrogenase p...    37   0.12 
BC014483-1|AAH14483.1|  468|Homo sapiens coenzyme Q6 homolog, mo...    33   1.4  
BC014181-1|AAH14181.1|  468|Homo sapiens coenzyme Q6 homolog, mo...    33   1.4  
AK222965-1|BAD96685.1|  468|Homo sapiens CGI-10 protein isoform ...    33   1.4  
AF132944-1|AAD27719.1|  468|Homo sapiens CGI-10 protein protein.       31   5.7  

>BC034502-1|AAH34502.1|  594|Homo sapiens choline dehydrogenase
           protein.
          Length = 594

 Score = 58.8 bits (136), Expect = 3e-08
 Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 6/140 (4%)
 Frame = +2

Query: 299 QNGSRYDFIIVGAGTAGSALAARLSEVANFSVLLLEAG------GDPPIEAIIPAFRETL 460
           ++   Y +++VGAG+AG  LA RL+E     VLLLEAG      G   +   I      L
Sbjct: 36  ESRDEYSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVRAGSKRLSWKI-HMPAAL 94

Query: 461 KASSVDWNFTSVENNITSQALKRGIEQQPRGKMLGGSGSLNHMVYARGFPSELPRMGLNR 640
            A+  D  +    +    + L   +   PRG++ GGS SLN MVY RG   +  R     
Sbjct: 95  VANLCDDRYNWCYHTEVQRGLDGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQG 154

Query: 641 RRNLELDQRAQIFHENRAHD 700
            R  +       F + + H+
Sbjct: 155 ARGWDYAHCLPYFRKAQGHE 174


>AJ272267-1|CAB75961.1|  482|Homo sapiens choline dehydrogenase
           protein.
          Length = 482

 Score = 36.7 bits (81), Expect = 0.12
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +2

Query: 545 PRGKMLGGSGSLNHMVYARGFPSELPRMGLNRRRNLELDQRAQIFHENRAHD 700
           PRG++ GGS SLN MVY RG   +  R      R  +       F + + H+
Sbjct: 11  PRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQGHE 62


>BC014483-1|AAH14483.1|  468|Homo sapiens coenzyme Q6 homolog,
           monooxygenase (S. cerevisiae) protein.
          Length = 468

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +2

Query: 275 TWPKDSVLQNGSRYDFIIVGAGTAGSALAARLSEVANF---SVLLLEAGGDPPIEAIIPA 445
           +W + S     + YD ++ G G  G+A+A  L    +F    +LLLEAG    +E +   
Sbjct: 23  SWRRWSGASTDTVYDVVVSGGGLVGAAMACALGYDIHFHDKKILLLEAGPKKVLEKLSET 82

Query: 446 FRETLKASS 472
           +   + + S
Sbjct: 83  YSNRVSSIS 91


>BC014181-1|AAH14181.1|  468|Homo sapiens coenzyme Q6 homolog,
           monooxygenase (S. cerevisiae) protein.
          Length = 468

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +2

Query: 275 TWPKDSVLQNGSRYDFIIVGAGTAGSALAARLSEVANF---SVLLLEAGGDPPIEAIIPA 445
           +W + S     + YD ++ G G  G+A+A  L    +F    +LLLEAG    +E +   
Sbjct: 23  SWRRWSGASTDTVYDVVVSGGGLVGAAMACALGYDIHFHDKKILLLEAGPKKVLEKLSET 82

Query: 446 FRETLKASS 472
           +   + + S
Sbjct: 83  YSNRVSSIS 91


>AK222965-1|BAD96685.1|  468|Homo sapiens CGI-10 protein isoform a
           variant protein.
          Length = 468

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +2

Query: 275 TWPKDSVLQNGSRYDFIIVGAGTAGSALAARLSEVANF---SVLLLEAGGDPPIEAIIPA 445
           +W + S     + YD ++ G G  G+A+A  L    +F    +LLLEAG    +E +   
Sbjct: 23  SWRRWSGASTDTVYDVVVSGGGLVGAAMACALGYDIHFHDKKILLLEAGPKKVLEKLSET 82

Query: 446 FRETLKASS 472
           +   + + S
Sbjct: 83  YSNRVSSIS 91


>AF132944-1|AAD27719.1|  468|Homo sapiens CGI-10 protein protein.
          Length = 468

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +2

Query: 314 YDFIIVGAGTAGSALAARLSEVANF---SVLLLEAGGDPPIEAIIPAFRETLKASS 472
           YD ++ G G  G+A+A  L    +F    +LLLEAG    +E +   +   + + S
Sbjct: 36  YDVVVSGGGLVGAAMACALGYDIHFHDKKILLLEAGPKKVLEKLSETYSNRVSSIS 91


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,718,696
Number of Sequences: 237096
Number of extensions: 3112313
Number of successful extensions: 8169
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8159
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11714809042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)