Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_H07
         (1014 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9VM93 Cluster: CG11199-PA, isoform A; n=8; Endopterygo...    54   6e-06
UniRef50_Q9SR10 Cluster: F7O18.12 protein; n=2; Arabidopsis thal...    35   3.8  

>UniRef50_Q9VM93 Cluster: CG11199-PA, isoform A; n=8;
           Endopterygota|Rep: CG11199-PA, isoform A - Drosophila
           melanogaster (Fruit fly)
          Length = 1201

 Score = 54.0 bits (124), Expect = 6e-06
 Identities = 23/29 (79%), Positives = 24/29 (82%)
 Frame = +1

Query: 349 MWNMMCDVMPTISEDXVPXRSPQVSGEDA 435
           MWNMMCDVMPTISED +  RS Q SGEDA
Sbjct: 1   MWNMMCDVMPTISEDSISQRSSQFSGEDA 29


>UniRef50_Q9SR10 Cluster: F7O18.12 protein; n=2; Arabidopsis
           thaliana|Rep: F7O18.12 protein - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 159

 Score = 34.7 bits (76), Expect = 3.8
 Identities = 26/83 (31%), Positives = 26/83 (31%)
 Frame = -1

Query: 909 GARGXRGXXXXVXGGRGDXXGXXXRXXXXVXXXRGGGGXXXTXXXPRXXPARTXGXAXRR 730
           G  G RG      GGR    G            RGGGG        R  P    G    R
Sbjct: 74  GGGGGRGGGGFGGGGRSFGGGGSSSRGGGGSSSRGGGGSSSRGGGLRPIP--IYGGGTHR 131

Query: 729 XGLXXRGGXXCAPXWXGXSXXAG 661
            G    GG   A  W G S  AG
Sbjct: 132 SGHHSSGGRETASGWLGLSILAG 154


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 467,474,219
Number of Sequences: 1657284
Number of extensions: 5998464
Number of successful extensions: 9150
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8936
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 96347313172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)