Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_H07
         (1014 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC023587-1|AAH23587.1|  523|Homo sapiens REST corepressor 2 prot...    33   2.2  
BC010608-1|AAH10608.1|  305|Homo sapiens RCOR2 protein protein.        33   2.2  
BC104912-1|AAI04913.1| 1236|Homo sapiens PPFIA2 protein protein.       32   3.8  
AF034799-1|AAC26100.1| 1257|Homo sapiens liprin-alpha2 protein.        32   3.8  
AB210009-1|BAE06091.1| 1258|Homo sapiens PPFIA2 variant protein ...    32   3.8  

>BC023587-1|AAH23587.1|  523|Homo sapiens REST corepressor 2
           protein.
          Length = 523

 Score = 32.7 bits (71), Expect = 2.2
 Identities = 20/68 (29%), Positives = 23/68 (33%)
 Frame = +2

Query: 707 PPRXXRPXRRXAXPXVRAGXHLGXXXVXXXPPPPLXXXTXXXXRXXXPXXSPRPPXTXXX 886
           PP    P      P ++ G  L        PPPPL        R       P+PP T   
Sbjct: 455 PPLPTAPTLLRQPPPLQQGRFLQPRLAPNQPPPPLIRPALAAPR-HSARPGPQPPPTLIG 513

Query: 887 XPRXPRAP 910
            P  P AP
Sbjct: 514 APLEPPAP 521


>BC010608-1|AAH10608.1|  305|Homo sapiens RCOR2 protein protein.
          Length = 305

 Score = 32.7 bits (71), Expect = 2.2
 Identities = 20/68 (29%), Positives = 23/68 (33%)
 Frame = +2

Query: 707 PPRXXRPXRRXAXPXVRAGXHLGXXXVXXXPPPPLXXXTXXXXRXXXPXXSPRPPXTXXX 886
           PP    P      P ++ G  L        PPPPL        R       P+PP T   
Sbjct: 237 PPLPTAPTLLRQPPPLQQGRFLQPRLAPNQPPPPLIRPALAAPR-HSARPGPQPPPTLIG 295

Query: 887 XPRXPRAP 910
            P  P AP
Sbjct: 296 APLEPPAP 303


>BC104912-1|AAI04913.1| 1236|Homo sapiens PPFIA2 protein protein.
          Length = 1236

 Score = 31.9 bits (69), Expect = 3.8
 Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 358 MMCDVMPTISED-XVPXRSPQVSGEDA 435
           MMC+VMPTI+ED  +  R  Q SG D+
Sbjct: 1   MMCEVMPTINEDTPMSQRGSQSSGSDS 27


>AF034799-1|AAC26100.1| 1257|Homo sapiens liprin-alpha2 protein.
          Length = 1257

 Score = 31.9 bits (69), Expect = 3.8
 Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 358 MMCDVMPTISED-XVPXRSPQVSGEDA 435
           MMC+VMPTI+ED  +  R  Q SG D+
Sbjct: 1   MMCEVMPTINEDTPMSQRGSQSSGSDS 27


>AB210009-1|BAE06091.1| 1258|Homo sapiens PPFIA2 variant protein
           protein.
          Length = 1258

 Score = 31.9 bits (69), Expect = 3.8
 Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 358 MMCDVMPTISED-XVPXRSPQVSGEDA 435
           MMC+VMPTI+ED  +  R  Q SG D+
Sbjct: 12  MMCEVMPTINEDTPMSQRGSQSSGSDS 38


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,399,832
Number of Sequences: 237096
Number of extensions: 1123405
Number of successful extensions: 1556
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1525
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 13599698196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)