Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_H06
         (939 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0376 + 22896481-22896972                                         31   1.0  
02_01_0311 - 2075881-2076165,2076450-2076519,2076628-2076691,207...    29   4.0  
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376...    29   5.3  
12_02_0451 - 19179592-19179648,19179745-19179879,19180214-191802...    28   9.3  
09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908...    28   9.3  
07_03_0713 - 20882442-20883068,20883950-20883955                       28   9.3  

>11_06_0376 + 22896481-22896972
          Length = 163

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 629 SKQISIPKEHYRWILGKQGQKLKELEKVTATKXM 730
           SKQ+ +P+EH  WIL ++     E +K  A + +
Sbjct: 8   SKQLRMPQEHISWILHRREPSFDEADKAAARREL 41


>02_01_0311 -
           2075881-2076165,2076450-2076519,2076628-2076691,
           2076798-2076837,2076930-2077006,2077095-2077311,
           2077482-2078132
          Length = 467

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -1

Query: 519 MCAPVSLVMEWQVLKDSPSPKVLALSSFRSSYGT 418
           M  PVS   + + L+D+ SP  + LSS RSS GT
Sbjct: 227 MSLPVSSCSDQEDLQDARSPAKVQLSSSRSSSGT 260


>06_01_0520 +
           3761990-3762327,3763304-3763589,3763746-3763820,
           3764013-3764961,3766967-3767064,3768144-3768284,
           3768758-3768874,3768924-3769013,3769014-3771818
          Length = 1632

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
 Frame = +2

Query: 191 MMHQQSMMVGDVIPVHPDVPMHV--EEMNNVGYENNVSFAYDDLFPALPHSQPLVQRNIQ 364
           + HQQ M +    P+HP + +H+  E   NV     V   +  LF +    QP   +N+Q
Sbjct: 664 LSHQQIMDLNKTWPLHPILLIHLASELPKNVSLMQVVRLLH--LFSSRNRLQPRQNQNLQ 721

Query: 365 QATNKLRVGSSLHTQVFHVPYEERKLDNANTFGEGES-LRTCHSIT 499
               K    SSL  Q      + +   N+++ G  +S  +TC S T
Sbjct: 722 DELPKESEMSSLVNQT-----DIQSSSNSSSHGSFKSPCQTCSSST 762


>12_02_0451 -
           19179592-19179648,19179745-19179879,19180214-19180247,
           19180347-19180423,19180523-19180598,19180792-19180925,
           19181772-19181878,19182505-19182808,19182913-19183218
          Length = 409

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = +2

Query: 452 NTFGEGESLRTCHSITKDTGAHIEISTSKDGSLTFLITGKQSAVLEARRQILTHFQQQAS 631
           NT+ + E L+    +  D G H+ + T+K    TFL    ++A        L H+    S
Sbjct: 303 NTYTKAEVLKMEGLVLNDMGFHLSVPTTK----TFLRRFLRAAQASRNNHTLEHYTSYKS 358

Query: 632 KQISI 646
             I I
Sbjct: 359 SDIQI 363


>09_04_0618 +
           18988614-18989102,18989913-18990314,18990555-18990806,
           18991564-18991941,18992350-18992426,18992700-18992808,
           18993424-18993574,18993810-18993903,18997072-18997474,
           18997590-18997742,18998115-18998474
          Length = 955

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +2

Query: 572 QSAVLEARRQILTHFQQQASK---QISIPKEHYRWILGKQGQKLKELEKVT 715
           Q AVL    +I      ++S    ++ +P +H   +LGK G  + E+ K+T
Sbjct: 307 QDAVLRVHSRISESSMDKSSAVTARLLVPSQHIGCLLGKGGSIIAEMRKIT 357


>07_03_0713 - 20882442-20883068,20883950-20883955
          Length = 210

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 317 FPALPHSQPLVQRNIQQATNKLRVGSSLHTQVFH 418
           FP++P  Q    RN+QQ  +K    S+L T  FH
Sbjct: 5   FPSVPAKQRRRPRNLQQVKDK-ATASALETAAFH 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,678,258
Number of Sequences: 37544
Number of extensions: 413616
Number of successful extensions: 1104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)