Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_H06
(939 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M64098-1|AAA35962.1| 1268|Homo sapiens high density lipoprotein ... 138 3e-32
BC001179-1|AAH01179.1| 1268|Homo sapiens high density lipoprotei... 138 3e-32
AC104841-2|AAY14717.1| 1268|Homo sapiens unknown protein. 137 6e-32
AL589765-13|CAI17177.1| 561|Homo sapiens tudor and KH domain co... 41 0.006
AF227192-1|AAF36701.1| 561|Homo sapiens tudor and KH domain-con... 41 0.006
AF119121-1|AAD30971.1| 606|Homo sapiens putative RNA binding pr... 41 0.006
AL589765-15|CAI17176.1| 557|Homo sapiens tudor and KH domain co... 41 0.007
AK127833-1|BAC87153.1| 847|Homo sapiens protein ( Homo sapiens ... 32 2.6
AL589765-14|CAI17175.1| 516|Homo sapiens tudor and KH domain co... 31 8.0
>M64098-1|AAA35962.1| 1268|Homo sapiens high density lipoprotein
binding protein protein.
Length = 1268
Score = 138 bits (334), Expect = 3e-32
Identities = 70/164 (42%), Positives = 103/164 (62%), Gaps = 4/164 (2%)
Frame = +2
Query: 245 VPMHVEEMNNVGYENNVSFAYDDLFPALPHSQPLVQRNIQQAT---NKLR-VGSSLHTQV 412
VP ++ E + Y D FP LP ++ + A NK+R + +S+ TQV
Sbjct: 20 VPQQIKVATLNSEEESDPPTYKDAFPPLPEKAACLESAQEPAGAWGNKIRPIKASVITQV 79
Query: 413 FHVPYEERKLDNANTFGEGESLRTCHSITKDTGAHIEISTSKDGSLTFLITGKQSAVLEA 592
FHVP EERK + N FGEGE + C I + TGAH+E+S +KD L+ +++GK AV++A
Sbjct: 80 FHVPLEERKYKDMNQFGEGEQAKICLEIMQRTGAHLELSLAKDQGLSIMVSGKLDAVMKA 139
Query: 593 RRQILTHFQQQASKQISIPKEHYRWILGKQGQKLKELEKVTATK 724
R+ I+ Q QAS ++IPKEH+R+++GK G+KL++LE TATK
Sbjct: 140 RKDIVARLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATK 183
Score = 36.3 bits (80), Expect = 0.16
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Frame = +2
Query: 419 VPYEERKLDNANTFG-EGESLRTCHSITKDTGAHIEISTSKDGSLTFLITGKQSAVLEAR 595
+ E +K + G +G SL+ I + TG +EI S S T ++ G+ + +A
Sbjct: 298 IAVEVKKSQHKYVIGPKGNSLQ---EILERTGVSVEIPPSDSISETVILRGEPEKLGQAL 354
Query: 596 RQILTHFQQQASKQISIPKEHYRWILGKQGQKLKEL 703
++ ++ P +R+I+GK+GQ L ++
Sbjct: 355 TEVYAKANSFTVSSVAAPSWLHRFIIGKKGQNLAKI 390
Score = 32.7 bits (71), Expect = 2.0
Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Frame = +2
Query: 458 FGEGESLRTCHSITKDTGAHIEISTSKDGSLTFLITGKQSAVLEARRQILTHFQQQASK- 634
F G R I ++TG I I + TG++ + +A +I ++++ K
Sbjct: 236 FIAGPYNRLVGEIMQETGTRINIPPPSVNRTEIVFTGEKEQLAQAVARIKKIYEEKKKKT 295
Query: 635 ---QISIPKEHYRWILGKQGQKLKEL 703
+ + K +++++G +G L+E+
Sbjct: 296 TTIAVEVKKSQHKYVIGPKGNSLQEI 321
>BC001179-1|AAH01179.1| 1268|Homo sapiens high density lipoprotein
binding protein (vigilin) protein.
Length = 1268
Score = 138 bits (334), Expect = 3e-32
Identities = 70/164 (42%), Positives = 103/164 (62%), Gaps = 4/164 (2%)
Frame = +2
Query: 245 VPMHVEEMNNVGYENNVSFAYDDLFPALPHSQPLVQRNIQQAT---NKLR-VGSSLHTQV 412
VP ++ E + Y D FP LP ++ + A NK+R + +S+ TQV
Sbjct: 20 VPQQIKVATLNSEEESDPPTYKDAFPPLPEKAACLESAQEPAGAWGNKIRPIKASVITQV 79
Query: 413 FHVPYEERKLDNANTFGEGESLRTCHSITKDTGAHIEISTSKDGSLTFLITGKQSAVLEA 592
FHVP EERK + N FGEGE + C I + TGAH+E+S +KD L+ +++GK AV++A
Sbjct: 80 FHVPLEERKYKDMNQFGEGEQAKICLEIMQRTGAHLELSLAKDQGLSIMVSGKLDAVMKA 139
Query: 593 RRQILTHFQQQASKQISIPKEHYRWILGKQGQKLKELEKVTATK 724
R+ I+ Q QAS ++IPKEH+R+++GK G+KL++LE TATK
Sbjct: 140 RKDIVARLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATK 183
Score = 36.3 bits (80), Expect = 0.16
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Frame = +2
Query: 419 VPYEERKLDNANTFG-EGESLRTCHSITKDTGAHIEISTSKDGSLTFLITGKQSAVLEAR 595
+ E +K + G +G SL+ I + TG +EI S S T ++ G+ + +A
Sbjct: 298 IAVEVKKSQHKYVIGPKGNSLQ---EILERTGVSVEIPPSDSISETVILRGEPEKLGQAL 354
Query: 596 RQILTHFQQQASKQISIPKEHYRWILGKQGQKLKEL 703
++ ++ P +R+I+GK+GQ L ++
Sbjct: 355 TEVYAKANSFTVSSVAAPSWLHRFIIGKKGQNLAKI 390
Score = 32.7 bits (71), Expect = 2.0
Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Frame = +2
Query: 458 FGEGESLRTCHSITKDTGAHIEISTSKDGSLTFLITGKQSAVLEARRQILTHFQQQASK- 634
F G R I ++TG I I + TG++ + +A +I ++++ K
Sbjct: 236 FIAGPYNRLVGEIMQETGTRINIPPPSVNRTEIVFTGEKEQLAQAVARIKKIYEEKKKKT 295
Query: 635 ---QISIPKEHYRWILGKQGQKLKEL 703
+ + K +++++G +G L+E+
Sbjct: 296 TTIAVEVKKSQHKYVIGPKGNSLQEI 321
>AC104841-2|AAY14717.1| 1268|Homo sapiens unknown protein.
Length = 1268
Score = 137 bits (331), Expect = 6e-32
Identities = 69/164 (42%), Positives = 103/164 (62%), Gaps = 4/164 (2%)
Frame = +2
Query: 245 VPMHVEEMNNVGYENNVSFAYDDLFPALPHSQPLVQRNIQQAT---NKLR-VGSSLHTQV 412
VP ++ E + Y D FP LP ++ + + NK+R + +S+ TQV
Sbjct: 20 VPQQIKVATLNSEEESDPPTYKDAFPPLPEKAACLESAQEPSGAWGNKIRPIKASVITQV 79
Query: 413 FHVPYEERKLDNANTFGEGESLRTCHSITKDTGAHIEISTSKDGSLTFLITGKQSAVLEA 592
FHVP EERK + N FGEGE + C I + TGAH+E+S +KD L+ +++GK AV++A
Sbjct: 80 FHVPLEERKYKDMNQFGEGEQAKICLEIMQRTGAHLELSLAKDQGLSIMVSGKLDAVMKA 139
Query: 593 RRQILTHFQQQASKQISIPKEHYRWILGKQGQKLKELEKVTATK 724
R+ I+ Q QAS ++IPKEH+R+++GK G+KL++LE TATK
Sbjct: 140 RKDIVARLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATK 183
Score = 36.3 bits (80), Expect = 0.16
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Frame = +2
Query: 419 VPYEERKLDNANTFG-EGESLRTCHSITKDTGAHIEISTSKDGSLTFLITGKQSAVLEAR 595
+ E +K + G +G SL+ I + TG +EI S S T ++ G+ + +A
Sbjct: 298 IAVEVKKSQHKYVIGPKGNSLQ---EILERTGVSVEIPPSDSISETVILRGEPEKLGQAL 354
Query: 596 RQILTHFQQQASKQISIPKEHYRWILGKQGQKLKEL 703
++ ++ P +R+I+GK+GQ L ++
Sbjct: 355 TEVYAKANSFTVSSVAAPSWLHRFIIGKKGQNLAKI 390
Score = 32.7 bits (71), Expect = 2.0
Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Frame = +2
Query: 458 FGEGESLRTCHSITKDTGAHIEISTSKDGSLTFLITGKQSAVLEARRQILTHFQQQASK- 634
F G R I ++TG I I + TG++ + +A +I ++++ K
Sbjct: 236 FIAGPYNRLVGEIMQETGTRINIPPPSVNRTEIVFTGEKEQLAQAVARIKKIYEEKKKKT 295
Query: 635 ---QISIPKEHYRWILGKQGQKLKEL 703
+ + K +++++G +G L+E+
Sbjct: 296 TTIAVEVKKSQHKYVIGPKGNSLQEI 321
>AL589765-13|CAI17177.1| 561|Homo sapiens tudor and KH domain
containing protein.
Length = 561
Score = 41.1 bits (92), Expect = 0.006
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Frame = +2
Query: 494 ITKDTGAHIEISTSKDGS-LTFLITGKQSAVLEAR---RQILTHFQQQASKQISIPKEHY 661
+ K TGA I++ T G LI+G V +A+ QILT S+Q+S+P+
Sbjct: 78 LRKQTGARIDVDTEDVGDERVLLISGFPVQVCKAKAAIHQILTE-NTPVSEQLSVPQRSV 136
Query: 662 RWILGKQGQKLKELEKVTATKXMCQE 739
I+G+ G+ ++ + K + K C +
Sbjct: 137 GRIIGRGGETIRSICKASGAKITCDK 162
Score = 30.7 bits (66), Expect = 8.0
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 587 EARRQILTHF-QQQASKQISIPKEHYRWILGKQGQKLKELEKVTATK 724
E+R + LT + ++ +P+E + I+G+QG +K+L K T +
Sbjct: 39 ESREERLTFVGEDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGAR 85
>AF227192-1|AAF36701.1| 561|Homo sapiens tudor and KH
domain-containing protein protein.
Length = 561
Score = 41.1 bits (92), Expect = 0.006
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Frame = +2
Query: 494 ITKDTGAHIEISTSKDGS-LTFLITGKQSAVLEAR---RQILTHFQQQASKQISIPKEHY 661
+ K TGA I++ T G LI+G V +A+ QILT S+Q+S+P+
Sbjct: 78 LRKQTGARIDVDTEDVGDERVLLISGFPVQVCKAKAAIHQILTE-NTPVSEQLSVPQRSV 136
Query: 662 RWILGKQGQKLKELEKVTATKXMCQE 739
I+G+ G+ ++ + K + K C +
Sbjct: 137 GRIIGRGGETIRSICKASGAKITCDK 162
Score = 30.7 bits (66), Expect = 8.0
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 587 EARRQILTHF-QQQASKQISIPKEHYRWILGKQGQKLKELEKVTATK 724
E+R + LT + ++ +P+E + I+G+QG +K+L K T +
Sbjct: 39 ESREERLTFVGEDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGAR 85
>AF119121-1|AAD30971.1| 606|Homo sapiens putative RNA binding
protein protein.
Length = 606
Score = 41.1 bits (92), Expect = 0.006
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Frame = +2
Query: 494 ITKDTGAHIEISTSKDGS-LTFLITGKQSAVLEAR---RQILTHFQQQASKQISIPKEHY 661
+ K TGA I++ T G LI+G V +A+ QILT S+Q+S+P+
Sbjct: 78 LRKQTGARIDVDTEDVGDERVLLISGFPVQVCKAKAAIHQILTE-NTPVSEQLSVPQRSV 136
Query: 662 RWILGKQGQKLKELEKVTATKXMCQE 739
I+G+ G+ ++ + K + K C +
Sbjct: 137 GRIIGRGGETIRSICKASGAKITCDK 162
Score = 30.7 bits (66), Expect = 8.0
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 587 EARRQILTHF-QQQASKQISIPKEHYRWILGKQGQKLKELEKVTATK 724
E+R + LT + ++ +P+E + I+G+QG +K+L K T +
Sbjct: 39 ESREERLTFVGEDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGAR 85
>AL589765-15|CAI17176.1| 557|Homo sapiens tudor and KH domain
containing protein.
Length = 557
Score = 40.7 bits (91), Expect = 0.007
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Frame = +2
Query: 500 KDTGAHIEISTSKDGS-LTFLITGKQSAVLEAR---RQILTHFQQQASKQISIPKEHYRW 667
K TGA I++ T G LI+G V +A+ QILT S+Q+S+P+
Sbjct: 76 KQTGARIDVDTEDVGDERVLLISGFPVQVCKAKAAIHQILTE-NTPVSEQLSVPQRSVGR 134
Query: 668 ILGKQGQKLKELEKVTATKXMCQE 739
I+G+ G+ ++ + K + K C +
Sbjct: 135 IIGRGGETIRSICKASGAKITCDK 158
>AK127833-1|BAC87153.1| 847|Homo sapiens protein ( Homo sapiens
cDNA FLJ45936 fis, clone PLACE7004103, highly similar
to Vigilin. ).
Length = 847
Score = 32.3 bits (70), Expect = 2.6
Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Frame = +2
Query: 500 KDTGAHIEISTSKDGSLTFLITGKQSAVLEARRQILTHFQQQASK----QISIPKEHYRW 667
++TG I I + TG++ + +A +I ++++A+ ++ P +R+
Sbjct: 2 QETGTRINIPPPSVNRTEIVFTGEKEQLAQAVARIKKIYEEKANSFTVSSVAAPSWLHRF 61
Query: 668 ILGKQGQKLKEL 703
I+GK+GQ L ++
Sbjct: 62 IIGKKGQNLAKI 73
>AL589765-14|CAI17175.1| 516|Homo sapiens tudor and KH domain
containing protein.
Length = 516
Score = 30.7 bits (66), Expect = 8.0
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 587 EARRQILTHF-QQQASKQISIPKEHYRWILGKQGQKLKELEKVTATK 724
E+R + LT + ++ +P+E + I+G+QG +K+L K T +
Sbjct: 39 ESREERLTFVGEDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGAR 85
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,805,597
Number of Sequences: 237096
Number of extensions: 2344526
Number of successful extensions: 5346
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5346
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12325533684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -