Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_H03
(862 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0243 - 21813223-21813456,21814266-21814367,21814501-218147... 95 5e-20
03_01_0304 - 2378657-2378704,2378790-2378795,2378860-2379039,237... 90 2e-18
10_08_0290 + 16549048-16549262,16549770-16549833,16550106-165502... 83 4e-16
02_05_1326 - 35712102-35712473,35712608-35712720,35712944-357148... 33 0.39
08_02_0073 + 11919938-11920060,11922325-11922939 31 1.2
11_01_0521 + 4083594-4083763,4083765-4083963,4084059-4084244,408... 29 3.6
03_02_0291 + 7148768-7148853,7148966-7149170,7149823-7150238,715... 29 3.6
03_02_0425 + 8353009-8354703 29 6.3
04_01_0556 - 7156851-7157096,7157288-7157530,7158112-7158153,715... 28 8.3
02_03_0035 + 14173497-14173519,14173646-14173853,14173979-14175916 28 8.3
>09_06_0243 -
21813223-21813456,21814266-21814367,21814501-21814701,
21815591-21815716,21815791-21816072,21816218-21816388,
21816838-21816999,21817404-21817467,21818136-21818503
Length = 569
Score = 95.5 bits (227), Expect = 5e-20
Identities = 55/157 (35%), Positives = 86/157 (54%), Gaps = 6/157 (3%)
Frame = +3
Query: 315 YESAHIGHASCYVKLDIIQRILKSFFNIKIVSAMGITXXXXXXXXXGLESKTHFTNIAKQ 494
Y+ +HIGHA YV D++ R L+ + + K+ T + +++K+
Sbjct: 104 YDDSHIGHARAYVAFDVLYRYLR-YLDHKVRYVRNFTDIDDKIIARANQLGEDPFSLSKR 162
Query: 495 YEHEFWLDMASLNVAKPLIITRVSEHINSIEKFIQRLIDNNMAYVSKNGSVYFDTDKFSN 674
Y +F DMA+L+ P + RVS+HI+ I I+++IDN+ AY + G VYF + F
Sbjct: 163 YSDDFLSDMANLHCLPPSVEPRVSDHIDQIINMIKQIIDNDCAY-AIGGDVYFSVENFPE 221
Query: 675 YGKL--QKMQD--SGE--PSDDEKRNKMDFALWKSXK 767
YG L +K+ D +GE D+ K+N DFALWK+ K
Sbjct: 222 YGDLSGRKLDDNRAGERVAVDERKKNPADFALWKAAK 258
>03_01_0304 -
2378657-2378704,2378790-2378795,2378860-2379039,
2379145-2379327,2379549-2379632,2379748-2379873,
2379964-2380245,2380326-2380496,2380828-2380989,
2381501-2381564,2382040-2382221
Length = 495
Score = 89.8 bits (213), Expect = 2e-18
Identities = 53/157 (33%), Positives = 76/157 (48%), Gaps = 6/157 (3%)
Frame = +3
Query: 315 YESAHIGHASCYVKLDIIQRILKSFFNIKIVSAMGITXXXXXXXXXGLESKTHFTNIAKQ 494
Y+ +HIGHA YV D++ R LK F ++ T E+ T+++ +
Sbjct: 42 YDFSHIGHARAYVAFDVLYRYLK-FLGYEVEYVRNFTDIDDKIIKRANEAGETVTSLSSR 100
Query: 495 YEHEFWLDMASLNVAKPLIITRVSEHINSIEKFIQRLIDNNMAYVSKNGSVYFDTDKFSN 674
+ +EF LDMA L P RV++HI I + I ++++N AY + G VYF D F
Sbjct: 101 FINEFLLDMAQLQCLPPTCEPRVTDHIEHIIELITKIMENGKAY-AMEGDVYFSVDTFPE 159
Query: 675 YGKL------QKMQDSGEPSDDEKRNKMDFALWKSXK 767
Y L + S D KRN DFALWK+ K
Sbjct: 160 YLSLSGRKLDHNLAGSRVAVDTRKRNPADFALWKAAK 196
>10_08_0290 +
16549048-16549262,16549770-16549833,16550106-16550267,
16550786-16550956,16551041-16551235,16551421-16551546,
16551648-16551809,16551953-16552120,16552223-16552435
Length = 491
Score = 82.6 bits (195), Expect = 4e-16
Identities = 51/157 (32%), Positives = 73/157 (46%), Gaps = 6/157 (3%)
Frame = +3
Query: 315 YESAHIGHASCYVKLDIIQRILKSFFNIKIVSAMGITXXXXXXXXXGLESKTHFTNIAKQ 494
Y+ +H+GHA YV D++ R LK + ++ T E+ +++ +
Sbjct: 53 YDYSHVGHARAYVAFDVLFRYLK-YLGYEVNYVRNFTDIDDKIIKRANEAGEDALSLSSR 111
Query: 495 YEHEFWLDMASLNVAKPLIITRVSEHINSIEKFIQRLIDNNMAYVSKNGSVYFDTDKFSN 674
+ EF DM L P RV++HI I I +++DN AY + G VYF D F +
Sbjct: 112 FIDEFHRDMYELQCLPPTHEPRVTKHIEQIIDLITKIMDNGKAYTIE-GDVYFSVDNFPD 170
Query: 675 YGKLQ-KMQDSGEPS-----DDEKRNKMDFALWKSXK 767
Y L + D P D KRN DFALWKS K
Sbjct: 171 YLSLSGRKVDQNRPGTRVAVDARKRNPADFALWKSAK 207
>02_05_1326 - 35712102-35712473,35712608-35712720,35712944-35714857,
35714942-35715135,35715237-35716786,35716946-35717049,
35717258-35717399,35717692-35717910
Length = 1535
Score = 32.7 bits (71), Expect = 0.39
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Frame = +3
Query: 462 SKTHFTNIAKQYEHEFWLDMASLNVAKPLIITRVSEHINSIEKFIQRLIDNNMAYVSKNG 641
SK HFTN+ Q + + L V + L R+ + I SIE + L D N+A + +
Sbjct: 1026 SKDHFTNLGSQDIPDASISDI-LQVEEKLSSDRLHDGIFSIEGTLISLDDGNIADSNNSS 1084
Query: 642 SVYFDTDKFSNYGKLQ----KMQDSGEPSDDEKRNKMDFA 749
V+ +T N LQ K+QD RNK+D A
Sbjct: 1085 FVFHNTQINRNLLGLQKGSFKLQDE-HTMTPISRNKVDIA 1123
>08_02_0073 + 11919938-11920060,11922325-11922939
Length = 245
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 573 INSIEKFIQRLIDNNMAYVSKNGSVYFDTDKFSNYGKL 686
+N++ ++ ++D +MA G VYF F NY L
Sbjct: 204 VNTLSNMVKTMVDGSMAEYQATGPVYFPGGVFPNYQPL 241
>11_01_0521 +
4083594-4083763,4083765-4083963,4084059-4084244,
4085834-4086025,4086979-4087200,4089238-4089444,
4089681-4090082,4090201-4090230,4090307-4090318
Length = 539
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = +3
Query: 552 ITRVSEHINSIEKFIQRLIDNNMAYVSKNGSVYFDTDKFSNYGKLQKMQDS 704
IT+ + I +++ +Q +NN A++ +N ++ + N +L KM+DS
Sbjct: 310 ITQHGQQIQTLQNKVQLQTNNNEAHLLENRIQVLESAERQNASRLVKMEDS 360
>03_02_0291 +
7148768-7148853,7148966-7149170,7149823-7150238,
7150325-7150631,7150722-7151186
Length = 492
Score = 29.5 bits (63), Expect = 3.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 374 NSQIVLQYKNRLRHGYYGYR 433
+SQ++ QY +RHG+ GYR
Sbjct: 322 SSQVIAQYYQLIRHGFEGYR 341
>03_02_0425 + 8353009-8354703
Length = 564
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +3
Query: 489 KQYEHEFWLDMASLN---VAKPLIITRVSEHINSIEKFIQRLIDNNMAYVSKNGSVYFDT 659
+Q+ +EF+ S ++ P ++ N++ F+ ID N+ +KN ++ FD
Sbjct: 185 RQFTYEFYPTADSSGGSAISLPFLVQTKDPEENNLYPFVHLNIDGNLFIFAKNRAILFDY 244
Query: 660 DK 665
K
Sbjct: 245 KK 246
>04_01_0556 -
7156851-7157096,7157288-7157530,7158112-7158153,
7158324-7158425,7159209-7159342,7161071-7161131,
7161192-7161284,7161557-7161639,7161984-7162239
Length = 419
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 636 NGSVYFDTDKFSNYGKLQKMQDSGEPSDDEKRNKMDFA 749
+ + YF+ + + GK +K SG S +KR K D+A
Sbjct: 70 DNNTYFEYLRHISLGKCKKNSTSGSKSPKKKRQKGDYA 107
>02_03_0035 + 14173497-14173519,14173646-14173853,14173979-14175916
Length = 722
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +3
Query: 588 KFIQRLIDNNMAYVSKNGSVYFDTDKFSNYGKLQKMQDSGEPSDDEKRNKMDFA 749
K + LI N+ K+G V + + N L K +D GEP D D A
Sbjct: 625 KDLYSLIGNDEGNTEKDGPVLLVSKMWENSYNLSKERDDGEPEVDLLDTDRDIA 678
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,827,517
Number of Sequences: 37544
Number of extensions: 421046
Number of successful extensions: 887
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -