Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_H03
(862 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trn... 75 7e-14
AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trn... 75 7e-14
AF077541-10|AAM54170.2| 179|Caenorhabditis elegans Cysteinyl tr... 40 0.002
U41038-2|AAX88827.1| 635|Caenorhabditis elegans Serotonin/octop... 29 4.3
U41038-1|AAK29709.2| 683|Caenorhabditis elegans Serotonin/octop... 29 4.3
AF077541-12|AAY55886.1| 207|Caenorhabditis elegans Hypothetical... 29 4.3
AF031415-1|AAC15778.1| 635|Caenorhabditis elegans serotonin rec... 29 4.3
AF031414-1|AAC15827.1| 683|Caenorhabditis elegans serotonin rec... 29 4.3
Z92790-1|CAB07225.1| 239|Caenorhabditis elegans Hypothetical pr... 28 9.8
Z70205-1|CAA94117.2| 460|Caenorhabditis elegans Hypothetical pr... 28 9.8
Z29443-11|CAK55173.1| 367|Caenorhabditis elegans Hypothetical p... 28 9.8
U61948-8|AAB03147.2| 782|Caenorhabditis elegans Human hcf1 rela... 28 9.8
U00046-2|AAN65304.1| 860|Caenorhabditis elegans Temporarily ass... 28 9.8
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass... 28 9.8
AF072907-1|AAD12580.1| 782|Caenorhabditis elegans host cell fac... 28 9.8
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein. 28 9.8
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein. 28 9.8
>AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform a protein.
Length = 909
Score = 74.9 bits (176), Expect = 7e-14
Identities = 50/122 (40%), Positives = 70/122 (57%), Gaps = 24/122 (19%)
Frame = +3
Query: 474 FTNIAKQYEHEFWLDMASLNVAKPLIITRVSEHINSIEKFIQRLIDNNMAYVSKNGSVYF 653
F ++AK YE EF DMA LNV ++TRVSE++ + +++++I N AY +++GSVYF
Sbjct: 368 FDDLAKTYEKEFLADMARLNVLPVDVLTRVSEYVPEVITYVKKIISNGYAYAAEDGSVYF 427
Query: 654 DTDKFSN-------------YGK-----LQKMQDS-GE--PSDD---EKRNKMDFALWKS 761
DT F YG+ L+ M++S GE SDD KR+ DFALWKS
Sbjct: 428 DTKAFEQNPKHFYAKLVPEAYGEDSEQLLKNMKESEGELSMSDDRLKSKRSPNDFALWKS 487
Query: 762 XK 767
K
Sbjct: 488 SK 489
Score = 43.6 bits (98), Expect = 2e-04
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +3
Query: 306 PRXYESAHIGHASCYVKLDIIQRILKSFFNIKIVSAMGIT 425
P Y+S+H+GHA Y+ LDI++R+ + +F + M IT
Sbjct: 212 PTVYDSSHMGHARSYLSLDILRRVFRDYFGYDVEFIMNIT 251
Score = 31.5 bits (68), Expect = 0.80
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 212 PTGIYVYNCIANQRVPVILNDPHIATWYSCGPT 310
P + VYN + Q+ + N+ WY CGPT
Sbjct: 181 PPQLTVYNSLTRQKEVFVPNEGKRVRWYICGPT 213
>AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform b protein.
Length = 908
Score = 74.9 bits (176), Expect = 7e-14
Identities = 50/122 (40%), Positives = 70/122 (57%), Gaps = 24/122 (19%)
Frame = +3
Query: 474 FTNIAKQYEHEFWLDMASLNVAKPLIITRVSEHINSIEKFIQRLIDNNMAYVSKNGSVYF 653
F ++AK YE EF DMA LNV ++TRVSE++ + +++++I N AY +++GSVYF
Sbjct: 367 FDDLAKTYEKEFLADMARLNVLPVDVLTRVSEYVPEVITYVKKIISNGYAYAAEDGSVYF 426
Query: 654 DTDKFSN-------------YGK-----LQKMQDS-GE--PSDD---EKRNKMDFALWKS 761
DT F YG+ L+ M++S GE SDD KR+ DFALWKS
Sbjct: 427 DTKAFEQNPKHFYAKLVPEAYGEDSEQLLKNMKESEGELSMSDDRLKSKRSPNDFALWKS 486
Query: 762 XK 767
K
Sbjct: 487 SK 488
Score = 43.6 bits (98), Expect = 2e-04
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +3
Query: 306 PRXYESAHIGHASCYVKLDIIQRILKSFFNIKIVSAMGIT 425
P Y+S+H+GHA Y+ LDI++R+ + +F + M IT
Sbjct: 211 PTVYDSSHMGHARSYLSLDILRRVFRDYFGYDVEFIMNIT 250
Score = 31.5 bits (68), Expect = 0.80
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 212 PTGIYVYNCIANQRVPVILNDPHIATWYSCGPT 310
P + VYN + Q+ + N+ WY CGPT
Sbjct: 180 PPQLTVYNSLTRQKEVFVPNEGKRVRWYICGPT 212
>AF077541-10|AAM54170.2| 179|Caenorhabditis elegans Cysteinyl trna
synthetase protein2, isoform a protein.
Length = 179
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +3
Query: 306 PRXYESAHIGHASCYVKLDIIQRILKSFFNIKIVSAMGIT 425
P +S+H+GHA Y+ LDI++R+ + +F + M IT
Sbjct: 60 PTVNDSSHMGHARSYLSLDILRRVFRDYFGYDVEFIMNIT 99
>U41038-2|AAX88827.1| 635|Caenorhabditis elegans
Serotonin/octopamine receptor familyprotein 1, isoform b
protein.
Length = 635
Score = 29.1 bits (62), Expect = 4.3
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Frame = -1
Query: 610 SISLCMNF--SILLMCSDTLVMMS-----GFATFNDAISSQNSCSYCLAIFVKCVLLSRP 452
S+S+C+ + S + +CS ++V MS + + + ++N IF+K ++
Sbjct: 77 SVSMCLLYVYSDVFLCSASIVHMSVISLDRYLGISQPLRTRNRSK--TLIFIKIAIVWVV 134
Query: 451 FLMILSSISVIPMAETIFILKNDLRILCMISS 356
L++ I+V+ M +T IL+N+ CMI S
Sbjct: 135 TLLVSCPIAVLAMHDTANILRNN---QCMIFS 163
>U41038-1|AAK29709.2| 683|Caenorhabditis elegans
Serotonin/octopamine receptor familyprotein 1, isoform a
protein.
Length = 683
Score = 29.1 bits (62), Expect = 4.3
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Frame = -1
Query: 610 SISLCMNF--SILLMCSDTLVMMS-----GFATFNDAISSQNSCSYCLAIFVKCVLLSRP 452
S+S+C+ + S + +CS ++V MS + + + ++N IF+K ++
Sbjct: 125 SVSMCLLYVYSDVFLCSASIVHMSVISLDRYLGISQPLRTRNRSK--TLIFIKIAIVWVV 182
Query: 451 FLMILSSISVIPMAETIFILKNDLRILCMISS 356
L++ I+V+ M +T IL+N+ CMI S
Sbjct: 183 TLLVSCPIAVLAMHDTANILRNN---QCMIFS 211
>AF077541-12|AAY55886.1| 207|Caenorhabditis elegans Hypothetical
protein Y23H5A.8 protein.
Length = 207
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +3
Query: 495 YEHEFWLDMASLNVAKPLIITRVS 566
YE EF DMA LNV ++TRVS
Sbjct: 56 YEKEFLADMARLNVLPVDVLTRVS 79
>AF031415-1|AAC15778.1| 635|Caenorhabditis elegans serotonin
receptor protein.
Length = 635
Score = 29.1 bits (62), Expect = 4.3
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Frame = -1
Query: 610 SISLCMNF--SILLMCSDTLVMMS-----GFATFNDAISSQNSCSYCLAIFVKCVLLSRP 452
S+S+C+ + S + +CS ++V MS + + + ++N IF+K ++
Sbjct: 77 SVSMCLLYVYSDVFLCSASIVHMSVISLDRYLGISQPLRTRNRSK--TLIFIKIAIVWVV 134
Query: 451 FLMILSSISVIPMAETIFILKNDLRILCMISS 356
L++ I+V+ M +T IL+N+ CMI S
Sbjct: 135 TLLVSCPIAVLAMHDTANILRNN---QCMIFS 163
>AF031414-1|AAC15827.1| 683|Caenorhabditis elegans serotonin
receptor protein.
Length = 683
Score = 29.1 bits (62), Expect = 4.3
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Frame = -1
Query: 610 SISLCMNF--SILLMCSDTLVMMS-----GFATFNDAISSQNSCSYCLAIFVKCVLLSRP 452
S+S+C+ + S + +CS ++V MS + + + ++N IF+K ++
Sbjct: 125 SVSMCLLYVYSDVFLCSASIVHMSVISLDRYLGISQPLRTRNRSK--TLIFIKIAIVWVV 182
Query: 451 FLMILSSISVIPMAETIFILKNDLRILCMISS 356
L++ I+V+ M +T IL+N+ CMI S
Sbjct: 183 TLLVSCPIAVLAMHDTANILRNN---QCMIFS 211
>Z92790-1|CAB07225.1| 239|Caenorhabditis elegans Hypothetical
protein H03G16.1 protein.
Length = 239
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = -3
Query: 491 FSNICEVCFTFEAFLNDFVIYIRNTHGGDDFYIEERFENSLYDIEF 354
FS++ ++ TF+ F N+FV I++ FY+ +N ++ +F
Sbjct: 150 FSHVTDLNMTFDFFTNEFVPRIQDM----SFYLPGNLKNGRFEYDF 191
>Z70205-1|CAA94117.2| 460|Caenorhabditis elegans Hypothetical
protein C11H1.2 protein.
Length = 460
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/67 (23%), Positives = 29/67 (43%)
Frame = -1
Query: 607 ISLCMNFSILLMCSDTLVMMSGFATFNDAISSQNSCSYCLAIFVKCVLLSRPFLMILSSI 428
+ +F+ L CS +++ A D S Q + CL+I + +++ P M I
Sbjct: 40 VQFIFSFTFSLSCSLFELIIFEIADILDPTSRQKCWTNCLSIILLTLVILIPLYMAYMII 99
Query: 427 SVIPMAE 407
IP +
Sbjct: 100 QTIPFIQ 106
>Z29443-11|CAK55173.1| 367|Caenorhabditis elegans Hypothetical
protein T07C4.11 protein.
Length = 367
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = +2
Query: 107 LIKMKVFNLTFVRSITHVCSLKPYKDTKWLMPNGNPTGIYVYNCIANQRVPVI 265
L+K N F+ KD W++PNG P Y+ + +VP++
Sbjct: 19 LVKFGFKNEPFILGEWSTSGWTAVKD--WVLPNGQPNKEYLKKSYGDSKVPIL 69
>U61948-8|AAB03147.2| 782|Caenorhabditis elegans Human hcf1 related
protein 1 protein.
Length = 782
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +3
Query: 510 WLDMASLNVAKPLIITRVSEHINSIEKFIQRLIDNNMAYVSKNGSVYFDTDK 665
W D+ ++ A + ++ S+EK + LID+N A+ N SV+ DK
Sbjct: 553 WFDVGIIDKATINVTHYFNDRQQSLEKQLNDLIDHN-AFKCVNDSVFTTEDK 603
>U00046-2|AAN65304.1| 860|Caenorhabditis elegans Temporarily
assigned gene nameprotein 152, isoform c protein.
Length = 860
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 317 RICSHRSRQLLCETRYHTENSQIVLQYKNRLRHGYYGY 430
R+ S RS QL Y E+ + +Q H YYGY
Sbjct: 447 RLVSARSSQLRINIFYDREDRVVQIQNSKDFIHFYYGY 484
>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily assigned
gene nameprotein 152, isoform a protein.
Length = 2560
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 317 RICSHRSRQLLCETRYHTENSQIVLQYKNRLRHGYYGY 430
R+ S RS QL Y E+ + +Q H YYGY
Sbjct: 2118 RLVSARSSQLRINIFYDREDRVVQIQNSKDFIHFYYGY 2155
>AF072907-1|AAD12580.1| 782|Caenorhabditis elegans host cell factor
1 protein.
Length = 782
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +3
Query: 510 WLDMASLNVAKPLIITRVSEHINSIEKFIQRLIDNNMAYVSKNGSVYFDTDK 665
W D+ ++ A + ++ S+EK + LID+N A+ N SV+ DK
Sbjct: 553 WFDVGIIDKATINVTHYFNDRQQSLEKQLNDLIDHN-AFKCVNDSVFTTEDK 603
>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
Length = 2502
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 317 RICSHRSRQLLCETRYHTENSQIVLQYKNRLRHGYYGY 430
R+ S RS QL Y E+ + +Q H YYGY
Sbjct: 2060 RLVSARSSQLRINIFYDREDRVVQIQNSKDFIHFYYGY 2097
>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
Length = 2684
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 317 RICSHRSRQLLCETRYHTENSQIVLQYKNRLRHGYYGY 430
R+ S RS QL Y E+ + +Q H YYGY
Sbjct: 2242 RLVSARSSQLRINIFYDREDRVVQIQNSKDFIHFYYGY 2279
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,103,683
Number of Sequences: 27780
Number of extensions: 423299
Number of successful extensions: 1175
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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