Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_H02
         (958 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0299 - 17051570-17052474,17053542-17053755                       31   1.8  
02_05_0686 - 30900748-30902167,30903442-30904742                       31   1.8  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    30   2.4  
07_01_0479 + 3606663-3607448                                           29   5.5  
11_01_0066 - 536281-537196,537397-537452                               28   9.6  

>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 17/61 (27%), Positives = 19/61 (31%)
 Frame = -2

Query: 621 PXFXETXXXPLSXIXXPXPPPXXXXXXXLXXXXXXXPKXKXPFPPXXPXXFXPKXXPXPP 442
           P F      P+  +  P PPP               P    PFP   P    P   P PP
Sbjct: 237 PPFLPFPLPPIPFLTPPSPPPPAFPFPL--PPWPWAPPPAFPFPHLPPIFSPPSPPPPPP 294

Query: 441 P 439
           P
Sbjct: 295 P 295


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 15/45 (33%), Positives = 15/45 (33%)
 Frame = -2

Query: 573 PXPPPXXXXXXXLXXXXXXXPKXKXPFPPXXPXXFXPKXXPXPPP 439
           P PPP               P  K P PP  P     K  P PPP
Sbjct: 337 PPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPP 381


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 17/53 (32%), Positives = 18/53 (33%)
 Frame = -2

Query: 573 PXPPPXXXXXXXLXXXXXXXPKXKXPFPPXXPXXFXPKXXPXPPP*PXKXIXP 415
           P PPP       L       P    P PP  P    P   P PPP P   + P
Sbjct: 585 PPPPPPPPP---LPNCLVPSPPPPPPPPPILPNRSVPPPPPPPPPLPNHSVLP 634


>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -3

Query: 665 PFXXPXXKXFFPXXPPXFXKPXXPPFXKXXXLPPPP 558
           P   P  +   P  PP   +P  PP      +PPPP
Sbjct: 214 PMGPPQVRPGMPGGPPPGMRPGMPPPPFRPGMPPPP 249


>11_01_0066 - 536281-537196,537397-537452
          Length = 323

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 18/73 (24%), Positives = 22/73 (30%)
 Frame = -2

Query: 633 SXXSPXFXETXXXPLSXIXXPXPPPXXXXXXXLXXXXXXXPKXKXPFPPXXPXXFXPKXX 454
           S  +P    T   P   +    PPP               P    P PP  P     +  
Sbjct: 193 SDPAPPTPPTIARPPRPLPPASPPPPSIATPPPSPASPPPPSTATP-PPPSPTPTTTRAS 251

Query: 453 PXPPP*PXKXIXP 415
           P PPP P   + P
Sbjct: 252 PTPPPIPTATVRP 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,391,479
Number of Sequences: 37544
Number of extensions: 96524
Number of successful extensions: 897
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2764678640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)