Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_G23
         (976 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    30   0.43 
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom...    28   2.3  
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    27   5.3  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   7.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   9.3  
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ...    26   9.3  

>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 30.3 bits (65), Expect = 0.43
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -1

Query: 508 LHNRPSXQSLCHHRPHRQPYCLSCLTKSHRKVHRSTLISELRSRSRHQEQALRRILVPP 332
           L N  + Q + H  PH  P  LS   + +  +  +TLI +L S S+      RR +  P
Sbjct: 515 LQNSLAQQPIGHSTPHNSPSLLSVKKRQNNHIRSNTLI-QLNSNSKDSTIFPRRSVTVP 572


>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 391 QKLEWSDGLFDVTWSGSSDNTAACGAGDGTVIVXRVGC-AAPLRVLRAHTSEV 546
           Q  +  D LF V WS + +N      GDG++ +  +   + P+   + H +E+
Sbjct: 54  QHYDVEDSLFGVRWSQNCENQVYACCGDGSLRLFDLTMPSKPIHKWKEHKAEI 106


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +1

Query: 331 AEEPGFFLELAPDGGT-WIEVQKLEWSDGLFDVTWSGSSD--NTAACGAGDGTVI 486
           A E   F  L PD G+ W+ V K++ +DGL   ++   +D  NT+    GD + +
Sbjct: 536 ASEGQEFTLLEPDDGSGWVRV-KIDGTDGLIPASYVKLNDELNTSVTLDGDSSYV 589


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 509 AAQPTLXTITVPSPAPQAAVLSELP 435
           AAQP++ T +VP P P A V+ E P
Sbjct: 504 AAQPSVITPSVPQP-PAAPVVPEAP 527


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 18/65 (27%), Positives = 18/65 (27%)
 Frame = +3

Query: 759  HPXXAXPCXPPXGAPXTAQSXPSXXTPXPXPRXXHXPTPXXXAPXPGLXXGAXGXXLXRX 938
            HP    P  P   AP      P    P P P     P P    P P     A    L   
Sbjct: 1685 HPVSTPPVRPQSAAP------PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPAS 1738

Query: 939  HXPRV 953
              P V
Sbjct: 1739 SAPSV 1743


>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 314

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 570 HLLXPSWDTTVQLWDPDXXXVSQHXTG 650
           + L  SWD T++LWD +    +    G
Sbjct: 77  YALSASWDKTIRLWDLEKGECTHQFVG 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,805
Number of Sequences: 5004
Number of extensions: 47878
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)