Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_G22
(920 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 28 2.1
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 28 2.1
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 27 3.7
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 27 4.9
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p... 27 4.9
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 6.5
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 26 8.6
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 26 8.6
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 26 8.6
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 26 8.6
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 161 LNCIKIRCDFSKIIRDFLSRMTNQH 87
L+C K C F+ I DF S +TN +
Sbjct: 828 LSCSKYMCSFTFIYSDFTSNITNNY 852
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +3
Query: 360 QKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEKP 488
+KE+L N++ L+K++ E + +AIR + +SD +P
Sbjct: 571 EKERLLNMEKVLSKQVIGQNEAVTAVANAIRLSRAGLSDPNQP 613
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 369 QLANLKGHLN-KEIAFHQEQIKRHEDAIRRHKEQMS 473
QL NLK L KE+ F +EQI+ H+++ S
Sbjct: 63 QLENLKNDLKRKELEFEREQIELQRKLAEEHEQKNS 98
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +3
Query: 324 EAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIE 482
E +E E +K ++E ++ + A Q + +R+ED + EQM D++
Sbjct: 193 ENEKEGEGAHKSKREVMSEIIAKSKHYKAERQAEKERYEDEREKLDEQMEDLQ 245
>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 467
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 393 LNKEIAFHQEQIKRHEDAIRRHKEQMSDI 479
+N+E F E+ KR +D+ R+H +S I
Sbjct: 324 INREQFFADEEAKRFKDSFRKHFRDISRI 352
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 6.5
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Frame = +3
Query: 321 MEAARED-EYFYKKQKEQLANLKGHLN---KEIAFHQEQIKRHEDAIRRHKE-QMSDIEK 485
+EAA+ E + KE A+LK +N KE++ + Q+K + +R + E ++SD+ +
Sbjct: 326 LEAAQSSFEEQLESHKEAEASLKSQINFLEKEVSSLESQLKLANERLRHYDEIEISDMSE 385
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 8.6
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 336 EDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSD 476
E + + ++EQL N K + K H E++ + AI++ QM++
Sbjct: 283 ETNIYERYRREQLTNRKSGIPKLKKEHYERLNNEKRAIQQKITQMTN 329
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 25.8 bits (54), Expect = 8.6
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 539 LQNKEEYNIFYCFKXNFPAFIF 604
L++ EEY+ F+C + P F+F
Sbjct: 15 LKSTEEYDQFFCPSIDIPKFLF 36
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 25.8 bits (54), Expect = 8.6
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +3
Query: 414 HQEQIKRHEDAIRRHKEQMSDIE 482
H+E+IK E+ + K++MSD++
Sbjct: 766 HEEKIKSFEEKLSALKKEMSDVD 788
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 25.8 bits (54), Expect = 8.6
Identities = 13/56 (23%), Positives = 32/56 (57%)
Frame = +3
Query: 318 KMEAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEK 485
K EA + + Y K+Q +NL G ++ + E++K+ + ++++++ ++EK
Sbjct: 61 KEEAYQTLKNSYNSLKQQHSNLLGKVSGIKSTLGERLKKDSQELAQNRKRIQELEK 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,354
Number of Sequences: 5004
Number of extensions: 44391
Number of successful extensions: 116
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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