Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_G21
         (856 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ...    33   0.34 
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel...    33   0.34 
Z68297-6|CAE45045.1|  302|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical...    28   7.4  

>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
           helicase-4 protein.
          Length = 1156

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 222 CQKCLEFGHWSYECKGKRKIL 284
           C++C E GHW YEC  + K L
Sbjct: 667 CRRCAEEGHWGYECPTRPKDL 687


>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
           helicase protein 4 protein.
          Length = 1156

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 222 CQKCLEFGHWSYECKGKRKIL 284
           C++C E GHW YEC  + K L
Sbjct: 667 CRRCAEEGHWGYECPTRPKDL 687


>Z68297-6|CAE45045.1|  302|Caenorhabditis elegans Hypothetical
           protein F11A10.8 protein.
          Length = 302

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 216 IRCQKCLEFGHWSYEC-KGKRKILVRPSRTRIMHKNLKAKEEGQCSN 353
           + C KC E GH++  C KG    L   +      +    KE+G+ +N
Sbjct: 250 VTCYKCGEKGHYANRCHKGALAFLSNTAHLAHEQREKDEKEQGRINN 296


>AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical
           protein Y57A10A.31 protein.
          Length = 1048

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = -2

Query: 297 VKDELGSCVCPCTHSSSVQTPSTSGILCLEEKQQPELLAFSSQPDACYMFPESYSEFSK 121
           ++ +LGS   P          S   I     ++ P L+  SS+     +F E Y+EF+K
Sbjct: 193 IRRKLGSAAAPSPPILLAAPNSGYAIRFRHGEEMPTLIQKSSESQFALVFDEKYTEFTK 251


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,276,401
Number of Sequences: 27780
Number of extensions: 208923
Number of successful extensions: 619
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)