Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_G20
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81094-4|CAB03152.1|  528|Caenorhabditis elegans Hypothetical pr...    62   4e-10
U88165-5|AAK21392.1|  393|Caenorhabditis elegans Downstream of m...    29   3.3  
U34893-1|AAB01720.1|  393|Caenorhabditis elegans DOM-3 protein.        29   3.3  
L08403-7|AAA28019.2|  309|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z81094-4|CAB03152.1|  528|Caenorhabditis elegans Hypothetical
           protein F58G11.6 protein.
          Length = 528

 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 23/168 (13%)
 Frame = +3

Query: 180 INFFFVFNPTFGPKEGDELKRILYFYPNEVSPDARKMQVGLCEAVVKFMSTFSS----EP 347
           + FFFV +P  G KEG+E  R++YF+P     + +    G  EAVV F   F S    E 
Sbjct: 31  LEFFFVAHPLSGRKEGEEHNRVMYFHPKGEQLERQTEITGFAEAVVNFTENFLSTSRREI 90

Query: 348 CEALQ------------TQSKRYIFFQPEKNFWMVLVVRIPYTTKALSAVGESQGDIVNP 491
            E +             TQ   +++ + E + + +L V I   +K LS V  S   +  P
Sbjct: 91  SERISENEDGFDFRTVTTQRTEHVYIRTEDDQF-ILGVSI---SKQLSLV--SDYPLFQP 144

Query: 492 TVMQNLLTSAYKMFKMFRGPF----KNIPADDLYGISEQ---FFTPYI 614
            + +++L+ AYKMF+MF G F    KN+P DD+    E+   FF+ YI
Sbjct: 145 AI-RSILSDAYKMFRMFFGTFSSFIKNVP-DDIPKFKERLDFFFSKYI 190


>U88165-5|AAK21392.1|  393|Caenorhabditis elegans Downstream of mes
           (in same operon)protein 3 protein.
          Length = 393

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +3

Query: 207 TFGPKEGDELKRILYFYPNEVSPDARKMQVGLCEAVVKFMSTFSSEPCEALQTQSK 374
           TF PKEGDE   +L  + N+++P+  +++  + EA V       ++ C  +  + +
Sbjct: 105 TFDPKEGDEKIIMLLEWINQMAPEGGRLKKVIHEADVVCWRGLITKICSTIYNKEE 160


>U34893-1|AAB01720.1|  393|Caenorhabditis elegans DOM-3 protein.
          Length = 393

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +3

Query: 207 TFGPKEGDELKRILYFYPNEVSPDARKMQVGLCEAVVKFMSTFSSEPCEALQTQSK 374
           TF PKEGDE   +L  + N+++P+  +++  + EA V       ++ C  +  + +
Sbjct: 105 TFDPKEGDEKIIMLLEWINQMAPEGGRLKKVIHEADVVCWRGLITKICSTIYNKEE 160


>L08403-7|AAA28019.2|  309|Caenorhabditis elegans Hypothetical
           protein F42H10.9 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 425 PNTVYNQSIVSSW*KSGRYSQSYCNAKSP 511
           P  +Y   +VSS     +Y Q YCN  SP
Sbjct: 229 PTRLYGSQLVSSSSTLPKYDQLYCNTASP 257


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,723,911
Number of Sequences: 27780
Number of extensions: 346686
Number of successful extensions: 716
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)