Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_G19
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    28   1.5  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    27   2.6  

>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -2

Query: 233 RPDCHHTRLGRL--PGHNHHGRFAHQSFHGRIHTGNRNMLSQS 111
           RP   H R       GHN   +F+H SF  +  + + N L +S
Sbjct: 562 RPSIRHARSSPYIDTGHNEASKFSHTSFDPKASSKSSNSLKES 604


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 540 RLYNNGFHSNXVYAVSFINI 599
           RLY  GFHSN  + +SF +I
Sbjct: 192 RLYAFGFHSNNAWLISFYSI 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,950,579
Number of Sequences: 5004
Number of extensions: 31875
Number of successful extensions: 70
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)