Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_G19
(852 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0432 - 17103230-17103322,17103403-17103542,17104950-171052... 34 0.13
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 34 0.17
08_02_0862 + 21979932-21980057,21982221-21982289,21982394-21982603 33 0.29
01_06_0247 + 27851206-27851255,27851382-27851496,27852280-278524... 31 0.88
01_01_0772 - 5999333-5999881,6001105-6001315,6001791-6001858 31 1.5
02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505 30 2.0
08_02_0934 + 22747742-22748644 30 2.7
03_05_0220 + 22063411-22063468,22063535-22063545,22064478-220646... 29 3.6
08_02_0972 - 23187294-23188034 29 4.7
>08_02_0432 -
17103230-17103322,17103403-17103542,17104950-17105211,
17105391-17105495,17105496-17105558,17106876-17107022
Length = 269
Score = 34.3 bits (75), Expect = 0.13
Identities = 13/64 (20%), Positives = 26/64 (40%)
Frame = -2
Query: 368 HHIRLGCHQIRLGYHHIRPDYHHIRLDCHHIRLDCHHIRLDYHHIRPDCHHTRLGRLPGH 189
+H+ ++ + D++H+ D H + D H+ D++H+ D R
Sbjct: 55 YHVSRDTREVSCETCQVSDDFNHVLRDTHEVLCDTCHVSGDFYHVSRDTREMRTATAAAG 114
Query: 188 NHHG 177
HG
Sbjct: 115 YGHG 118
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 33.9 bits (74), Expect = 0.17
Identities = 24/65 (36%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Frame = -2
Query: 332 GYHHIRPDYHHIRLDCH-HIRLDCHHIRLDYHHIRPDCHHTRLGRLPGHNHHGRFAHQSF 156
G HH +HH H H D HH HH R HH + GH HH R H
Sbjct: 533 GRHH---RHHHDHRHRHGHSHGDHHHHYHGGHHQRRRHHHPPAWDVEGH-HHDRQQHSHE 588
Query: 155 HGRIH 141
GR H
Sbjct: 589 AGRNH 593
Score = 29.5 bits (63), Expect = 3.6
Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Frame = -2
Query: 371 RHHIRLGCHQIRLGYHHIRPDYHHIRLDCHHIRLDCHHIRL----DYHHIRPDCHHTRLG 204
RHH H+ R G+ H D+HH HH R HH +HH R H
Sbjct: 534 RHHRHHHDHRHRHGHSH--GDHHHHYHGGHHQRRRHHHPPAWDVEGHHHDRQQHSHE--- 588
Query: 203 RLPGHNHH 180
G NHH
Sbjct: 589 --AGRNHH 594
>08_02_0862 + 21979932-21980057,21982221-21982289,21982394-21982603
Length = 134
Score = 33.1 bits (72), Expect = 0.29
Identities = 10/48 (20%), Positives = 23/48 (47%)
Frame = -2
Query: 368 HHIRLGCHQIRLGYHHIRPDYHHIRLDCHHIRLDCHHIRLDYHHIRPD 225
+H+ H++ H+ D++H+ D + D + D++H+ D
Sbjct: 71 NHVSRDTHEVSCDICHVSDDFYHVSRDTREVSCDTCQVSDDFYHVSRD 118
Score = 31.5 bits (68), Expect = 0.88
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = -2
Query: 326 HHIRPDYHHIRLDCHHIRLDCHHIRLDYHHIRPD 225
+ + D++H+ D H + D H+ D++H+ D
Sbjct: 64 YQVSDDFNHVSRDTHEVSCDICHVSDDFYHVSRD 97
Score = 28.3 bits (60), Expect = 8.2
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = -2
Query: 347 HQIRLGYHHIRPDYHHIRLDCHHIRLDCHHIRLDYHHIRPD 225
+Q+ ++H+ D H + D H+ D +H+ D + D
Sbjct: 64 YQVSDDFNHVSRDTHEVSCDICHVSDDFYHVSRDTREVSCD 104
>01_06_0247 +
27851206-27851255,27851382-27851496,27852280-27852468,
27853698-27854057,27854138-27854201,27854365-27854504,
27854610-27854918,27855135-27855389
Length = 493
Score = 31.5 bits (68), Expect = 0.88
Identities = 9/48 (18%), Positives = 24/48 (50%)
Frame = -2
Query: 368 HHIRLGCHQIRLGYHHIRPDYHHIRLDCHHIRLDCHHIRLDYHHIRPD 225
+H+ ++ + + +++H+ D H + D H+ D++H+ D
Sbjct: 61 YHVSRDTREVSCETYQVPDNFNHVSRDTHEVSCDTCHVLDDFYHVSRD 108
>01_01_0772 - 5999333-5999881,6001105-6001315,6001791-6001858
Length = 275
Score = 30.7 bits (66), Expect = 1.5
Identities = 10/51 (19%), Positives = 23/51 (45%)
Frame = -2
Query: 368 HHIRLGCHQIRLGYHHIRPDYHHIRLDCHHIRLDCHHIRLDYHHIRPDCHH 216
+H+ ++ ++H+ D H + D + D +H+ D + D +H
Sbjct: 29 YHVSRDTRKVSYDFNHVSRDTHEVSCDTCRVSDDFYHVSRDTRKVSDDFYH 79
Score = 28.3 bits (60), Expect = 8.2
Identities = 9/38 (23%), Positives = 18/38 (47%)
Frame = -2
Query: 329 YHHIRPDYHHIRLDCHHIRLDCHHIRLDYHHIRPDCHH 216
++H+ D + D +H+ D H + D + D +H
Sbjct: 28 FYHVSRDTRKVSYDFNHVSRDTHEVSCDTCRVSDDFYH 65
>02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505
Length = 213
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 380 GNRRHHIRLGCHQIRLGYHHIRPD-YHHIRLDCHHIRLDCHHIRLDYHHIRP 228
G R H I H +R G +H+ PD YH I + H IR + + LD +H+ P
Sbjct: 79 GCRYHLIPHKYHPMR-GRNHLIPDRYHMIPYEYHQIR-SMNRLILDRYHLIP 128
>08_02_0934 + 22747742-22748644
Length = 300
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 263 HHIRLDYHHIRPDCHHTRLGRLPGHNHHGRFA 168
HH Y+ + PD + PGH+HH RFA
Sbjct: 140 HHGHGQYYPL-PDPYAAAFAAYPGHHHHHRFA 170
>03_05_0220 +
22063411-22063468,22063535-22063545,22064478-22064609,
22064696-22065799,22065874-22066566,22066968-22067019,
22067861-22067916,22067917-22068063
Length = 750
Score = 29.5 bits (63), Expect = 3.6
Identities = 9/50 (18%), Positives = 24/50 (48%)
Frame = -2
Query: 368 HHIRLGCHQIRLGYHHIRPDYHHIRLDCHHIRLDCHHIRLDYHHIRPDCH 219
+H+ ++ + + D++H+ D I D + + D++H+ D +
Sbjct: 687 YHVSGDTREVSCDTYQVSDDFYHVSGDTREISCDTYQVLDDFYHVSGDTY 736
>08_02_0972 - 23187294-23188034
Length = 246
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -2
Query: 248 DYHHIRPDCHHTR--LGRLPGHNHHGRFAHQSFHGRIHTGNRN 126
D+H + C T +G GH+H HQ HG + +G N
Sbjct: 31 DHHGMVVPCSPTSPCMGAQGGHHHFSSVNHQPAHGVVSSGGAN 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,874,253
Number of Sequences: 37544
Number of extensions: 187207
Number of successful extensions: 499
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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