Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_G19
         (852 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    30   0.031
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    27   0.29 

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 29.9 bits (64), Expect = 0.031
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 260 HIRLDYHHIRPDCHHTRLGRLP 195
           HI+  YH   PDC H  LG +P
Sbjct: 324 HIKSPYHTPEPDCIHELLGHMP 345


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 15/51 (29%), Positives = 20/51 (39%)
 Frame = -2

Query: 284 HHIRLDCHHIRLDYHHIRPDCHHTRLGRLPGHNHHGRFAHQSFHGRIHTGN 132
           HH  +   H  +   H  P  HH+     P H H    AH S+   I  G+
Sbjct: 415 HHHTMGHGHSHI---HATPHHHHSHAAT-PHHQHSTPLAHSSYPAAIQIGH 461



 Score = 22.6 bits (46), Expect = 4.7
 Identities = 16/61 (26%), Positives = 22/61 (36%)
 Frame = -2

Query: 293 LDCHHIRLDCHHIRLDYHHIRPDCHHTRLGRLPGHNHHGRFAHQSFHGRIHTGNRNMLSQ 114
           LD     L  H+  L+  +  P  HH  +G    H H     H S     H  +   L+ 
Sbjct: 391 LDLEDNALASHNNLLNNVYSTPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQHSTPLAH 450

Query: 113 S 111
           S
Sbjct: 451 S 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,607
Number of Sequences: 438
Number of extensions: 2397
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)