Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_G17
         (912 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81553-10|CAB04501.2|  668|Caenorhabditis elegans Hypothetical p...    30   2.6  
Z81537-2|CAB04373.1|  682|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>Z81553-10|CAB04501.2|  668|Caenorhabditis elegans Hypothetical
           protein F56H6.12 protein.
          Length = 668

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = -3

Query: 397 RNLFYSASPLSALKVLLRIISFISFFKWYSHISNN*LFLSSLIRLI 260
           R+ F  A+ + A  ++L II F +F KWY  ISN  L L  L+ L+
Sbjct: 326 RDKFLLAAAV-ATSIILSIIIFETFEKWYLKISNLSLALLVLLFLV 370


>Z81537-2|CAB04373.1|  682|Caenorhabditis elegans Hypothetical
           protein F41D3.2 protein.
          Length = 682

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -3

Query: 355 VLLRIISFISFFKWYSHISNN*LFLSSLIRLIKLSYSFN 239
           ++L I +F +F KWY  ISN     SSLI L+ L +  N
Sbjct: 342 IVLAIFTFETFEKWYLKISN-----SSLIILVTLLFVSN 375


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,422,427
Number of Sequences: 27780
Number of extensions: 166951
Number of successful extensions: 305
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)