Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_G13
(899 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 37 0.023
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 37 0.023
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 37 0.023
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.21
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.21
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 33 0.21
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 33 0.21
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.37
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.37
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.37
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 33 0.37
Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical pr... 31 1.1
U42841-13|AAC48170.1| 682|Caenorhabditis elegans Hypothetical p... 31 1.5
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 30 2.0
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 30 2.0
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 30 2.0
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 30 2.0
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 30 2.0
Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 29 4.5
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 6.0
AL033514-8|CAA22097.2| 715|Caenorhabditis elegans Hypothetical ... 28 7.9
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 36.7 bits (81), Expect = 0.023
Identities = 29/85 (34%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Frame = -2
Query: 766 GGXFWXXPQKXGPFXXPGLX---GXLXSXVFLGGXPPXPGXTRXPPXXGGXTXGXAQKXX 596
GG P GP PGL G GG PP G PP GG
Sbjct: 701 GGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 760
Query: 595 PPXPGGGXXXXXXKXXPPXPXGGGF 521
PP P GG PP P GGF
Sbjct: 761 PPPPPGG-----CPPPPPPPPPGGF 780
Score = 34.3 bits (75), Expect = 0.12
Identities = 29/86 (33%), Positives = 30/86 (34%), Gaps = 4/86 (4%)
Frame = +3
Query: 579 PPGXGGXXFWAXPXVXPPXKGGXRVXPGXGGXPPKKTXEXRXPXRPGXXKGPLFWGXXQX 758
PP GG P PP GG P GG PP T P PG P+ G
Sbjct: 707 PPITGGPP---PPPGLPPITGGPPPPPPPGGLPP-ITGGPPPPPPPGGLP-PISGGPPPP 761
Query: 759 XPP----PXXXXXXXXA*XKGAPPPP 824
PP P KG PPPP
Sbjct: 762 PPPPGGCPPPPPPPPPGGFKGGPPPP 787
Score = 31.5 bits (68), Expect = 0.85
Identities = 18/62 (29%), Positives = 18/62 (29%)
Frame = +1
Query: 397 PPPXGXXGXXXTXXKKXXPXQGXPXXFPXPGXXXXPXXXLXXTPXPXGXGGXFXGPXXXP 576
PPP G P G P P P P P GG GP P
Sbjct: 729 PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
Query: 577 PP 582
PP
Sbjct: 789 PP 790
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/81 (28%), Positives = 24/81 (29%)
Frame = +3
Query: 528 PPXGXGGXXFXXXXXXPPPGXGGXXFWAXPXVXPPXKGGXRVXPGXGGXPPKKTXEXRXP 707
PP G PPP G P PP G + P GG PP P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGG---LPPISGGPPPPPPPPGGCP 769
Query: 708 XRPGXXKGPLFWGXXQXXPPP 770
P F G PPP
Sbjct: 770 PPPPPPPPGGFKGGPPPPPPP 790
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/76 (27%), Positives = 23/76 (30%), Gaps = 2/76 (2%)
Frame = -1
Query: 743 PKKXPFXGSRPXGGPX--FPXFFGGXPPXPRXNPXSPLXXGGNGXXXPKXXXPXXRGGGX 570
P P G P P P GG PP P P+ G P P
Sbjct: 717 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
Query: 569 XXGPKXXPPXPXGXGV 522
G K PP P G+
Sbjct: 777 PGGFKGGPPPPPPPGM 792
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 36.7 bits (81), Expect = 0.023
Identities = 29/85 (34%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Frame = -2
Query: 766 GGXFWXXPQKXGPFXXPGLX---GXLXSXVFLGGXPPXPGXTRXPPXXGGXTXGXAQKXX 596
GG P GP PGL G GG PP G PP GG
Sbjct: 701 GGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 760
Query: 595 PPXPGGGXXXXXXKXXPPXPXGGGF 521
PP P GG PP P GGF
Sbjct: 761 PPPPPGG-----CPPPPPPPPPGGF 780
Score = 34.3 bits (75), Expect = 0.12
Identities = 29/86 (33%), Positives = 30/86 (34%), Gaps = 4/86 (4%)
Frame = +3
Query: 579 PPGXGGXXFWAXPXVXPPXKGGXRVXPGXGGXPPKKTXEXRXPXRPGXXKGPLFWGXXQX 758
PP GG P PP GG P GG PP T P PG P+ G
Sbjct: 707 PPITGGPP---PPPGLPPITGGPPPPPPPGGLPP-ITGGPPPPPPPGGLP-PISGGPPPP 761
Query: 759 XPP----PXXXXXXXXA*XKGAPPPP 824
PP P KG PPPP
Sbjct: 762 PPPPGGCPPPPPPPPPGGFKGGPPPP 787
Score = 31.5 bits (68), Expect = 0.85
Identities = 18/62 (29%), Positives = 18/62 (29%)
Frame = +1
Query: 397 PPPXGXXGXXXTXXKKXXPXQGXPXXFPXPGXXXXPXXXLXXTPXPXGXGGXFXGPXXXP 576
PPP G P G P P P P P GG GP P
Sbjct: 729 PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
Query: 577 PP 582
PP
Sbjct: 789 PP 790
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/81 (28%), Positives = 24/81 (29%)
Frame = +3
Query: 528 PPXGXGGXXFXXXXXXPPPGXGGXXFWAXPXVXPPXKGGXRVXPGXGGXPPKKTXEXRXP 707
PP G PPP G P PP G + P GG PP P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGG---LPPISGGPPPPPPPPGGCP 769
Query: 708 XRPGXXKGPLFWGXXQXXPPP 770
P F G PPP
Sbjct: 770 PPPPPPPPGGFKGGPPPPPPP 790
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/76 (27%), Positives = 23/76 (30%), Gaps = 2/76 (2%)
Frame = -1
Query: 743 PKKXPFXGSRPXGGPX--FPXFFGGXPPXPRXNPXSPLXXGGNGXXXPKXXXPXXRGGGX 570
P P G P P P GG PP P P+ G P P
Sbjct: 717 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
Query: 569 XXGPKXXPPXPXGXGV 522
G K PP P G+
Sbjct: 777 PGGFKGGPPPPPPPGM 792
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 36.7 bits (81), Expect = 0.023
Identities = 29/85 (34%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Frame = -2
Query: 766 GGXFWXXPQKXGPFXXPGLX---GXLXSXVFLGGXPPXPGXTRXPPXXGGXTXGXAQKXX 596
GG P GP PGL G GG PP G PP GG
Sbjct: 284 GGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 343
Query: 595 PPXPGGGXXXXXXKXXPPXPXGGGF 521
PP P GG PP P GGF
Sbjct: 344 PPPPPGG-----CPPPPPPPPPGGF 363
Score = 34.3 bits (75), Expect = 0.12
Identities = 29/86 (33%), Positives = 30/86 (34%), Gaps = 4/86 (4%)
Frame = +3
Query: 579 PPGXGGXXFWAXPXVXPPXKGGXRVXPGXGGXPPKKTXEXRXPXRPGXXKGPLFWGXXQX 758
PP GG P PP GG P GG PP T P PG P+ G
Sbjct: 290 PPITGGPP---PPPGLPPITGGPPPPPPPGGLPP-ITGGPPPPPPPGGLP-PISGGPPPP 344
Query: 759 XPP----PXXXXXXXXA*XKGAPPPP 824
PP P KG PPPP
Sbjct: 345 PPPPGGCPPPPPPPPPGGFKGGPPPP 370
Score = 31.5 bits (68), Expect = 0.85
Identities = 18/62 (29%), Positives = 18/62 (29%)
Frame = +1
Query: 397 PPPXGXXGXXXTXXKKXXPXQGXPXXFPXPGXXXXPXXXLXXTPXPXGXGGXFXGPXXXP 576
PPP G P G P P P P P GG GP P
Sbjct: 312 PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 371
Query: 577 PP 582
PP
Sbjct: 372 PP 373
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/81 (28%), Positives = 24/81 (29%)
Frame = +3
Query: 528 PPXGXGGXXFXXXXXXPPPGXGGXXFWAXPXVXPPXKGGXRVXPGXGGXPPKKTXEXRXP 707
PP G PPP G P PP G + P GG PP P
Sbjct: 296 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGG---LPPISGGPPPPPPPPGGCP 352
Query: 708 XRPGXXKGPLFWGXXQXXPPP 770
P F G PPP
Sbjct: 353 PPPPPPPPGGFKGGPPPPPPP 373
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/76 (27%), Positives = 23/76 (30%), Gaps = 2/76 (2%)
Frame = -1
Query: 743 PKKXPFXGSRPXGGPX--FPXFFGGXPPXPRXNPXSPLXXGGNGXXXPKXXXPXXRGGGX 570
P P G P P P GG PP P P+ G P P
Sbjct: 300 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 359
Query: 569 XXGPKXXPPXPXGXGV 522
G K PP P G+
Sbjct: 360 PGGFKGGPPPPPPPGM 375
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 33.5 bits (73), Expect = 0.21
Identities = 30/104 (28%), Positives = 33/104 (31%), Gaps = 4/104 (3%)
Frame = +3
Query: 525 PPPXGXGGXXFXXXXXXPPPGX--GGXXFWAXPXVXPPXKGGXRVXPGXGGXPPKKTXEX 698
PPP G PPPG G P PP + G PG GG PP
Sbjct: 288 PPPPSSG---MWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGP---PGMGGMPPPPPPGM 341
Query: 699 RXPXRPGXXKGPLF--WGXXQXXPPPXXXXXXXXA*XKGAPPPP 824
R P P + G PPP + PPPP
Sbjct: 342 RYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPP 385
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 33.5 bits (73), Expect = 0.21
Identities = 30/104 (28%), Positives = 33/104 (31%), Gaps = 4/104 (3%)
Frame = +3
Query: 525 PPPXGXGGXXFXXXXXXPPPGX--GGXXFWAXPXVXPPXKGGXRVXPGXGGXPPKKTXEX 698
PPP G PPPG G P PP + G PG GG PP
Sbjct: 298 PPPPSSG---MWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGP---PGMGGMPPPPPPGM 351
Query: 699 RXPXRPGXXKGPLF--WGXXQXXPPPXXXXXXXXA*XKGAPPPP 824
R P P + G PPP + PPPP
Sbjct: 352 RYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPP 395
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 33.5 bits (73), Expect = 0.21
Identities = 29/93 (31%), Positives = 31/93 (33%), Gaps = 4/93 (4%)
Frame = -1
Query: 716 RPXGGPXFPXFFGGXPPXPRX-NPXSPLXXGGNGXXX--PKXXXPXXRGG-GXXXGPKXX 549
R GGP P GG PP + NP GG G P P + G P
Sbjct: 96 RGLGGPP-PGMPGGVPPQAQPFNPHGGSMFGGPGGPGGPPPFGQPFQQAPQGMFNVPTGP 154
Query: 548 PPXPXGXGVXXXXXXGXXXXPGXGXXXGXPWXG 450
PP G G G PG G G P G
Sbjct: 155 PPLMGGGGDPRGPPGGMGGPPGHGGMGGPPGHG 187
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 33.5 bits (73), Expect = 0.21
Identities = 29/93 (31%), Positives = 31/93 (33%), Gaps = 4/93 (4%)
Frame = -1
Query: 716 RPXGGPXFPXFFGGXPPXPRX-NPXSPLXXGGNGXXX--PKXXXPXXRGG-GXXXGPKXX 549
R GGP P GG PP + NP GG G P P + G P
Sbjct: 376 RGLGGPP-PGMPGGVPPQAQPFNPHGGSMFGGPGGPGGPPPFGQPFQQAPQGMFNVPTGP 434
Query: 548 PPXPXGXGVXXXXXXGXXXXPGXGXXXGXPWXG 450
PP G G G PG G G P G
Sbjct: 435 PPLMGGGGDPRGPPGGMGGPPGHGGMGGPPGHG 467
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 32.7 bits (71), Expect = 0.37
Identities = 24/105 (22%), Positives = 29/105 (27%)
Frame = +3
Query: 453 PPGXSXXXSXPXXXXXXXXXXXXNPPPXGXGGXXFXXXXXXPPPGXGGXXFWAXPXVXPP 632
PP + P +PPP GG PPP + PP
Sbjct: 256 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 315
Query: 633 XKGGXRVXPGXGGXPPKKTXEXRXPXRPGXXKGPLFWGXXQXXPP 767
GG G G PP + + P R P PP
Sbjct: 316 QAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPP 360
Score = 32.3 bits (70), Expect = 0.49
Identities = 36/135 (26%), Positives = 38/135 (28%)
Frame = +3
Query: 441 KXXXPPGXSXXXSXPXXXXXXXXXXXXNPPPXGXGGXXFXXXXXXPPPGXGGXXFWAXPX 620
K PP S P PPP G PPP G
Sbjct: 228 KRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSP------- 280
Query: 621 VXPPXKGGXRVXPGXGGXPPKKTXEXRXPXRPGXXKGPLFWGXXQXXPPPXXXXXXXXA* 800
PP GG P G PP P R G L PPP A
Sbjct: 281 -PPPPAGGSPPPPRAGSPPPP------PPPRGSPPTGSL--------PPPQAGGSPPPA- 324
Query: 801 XKGAPPPPXXKKXXA 845
G+PPPP +K A
Sbjct: 325 GTGSPPPPPRQKRQA 339
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = -2
Query: 679 GGXPPXPGXTRXPPXXGGXTXGXAQKXXPPXPGGGXXXXXXKXXPPXP 536
G PP P PP G PP P GG PP P
Sbjct: 253 GSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPP 300
Score = 30.3 bits (65), Expect = 2.0
Identities = 22/78 (28%), Positives = 24/78 (30%)
Frame = -1
Query: 770 GGRGXLXXXPKKXPFXGSRPXGGPXFPXFFGGXPPXPRXNPXSPLXXGGNGXXXPKXXXP 591
G RG P P P G P P G PP P P G+ P P
Sbjct: 224 GFRGKRQAPPAGSPPPPPPPKGSP--PLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 281
Query: 590 XXRGGGXXXGPKXXPPXP 537
GG P+ P P
Sbjct: 282 PPPAGGSPPPPRAGSPPP 299
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/53 (32%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Frame = -2
Query: 679 GGXPPXPGXTRXPPXXG-GXTXGXAQKXXPPXPGGGXXXXXXKXXPPXPXGGG 524
G PP P PP G G PP P G PP P GG
Sbjct: 235 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGG 287
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 32.7 bits (71), Expect = 0.37
Identities = 24/105 (22%), Positives = 29/105 (27%)
Frame = +3
Query: 453 PPGXSXXXSXPXXXXXXXXXXXXNPPPXGXGGXXFXXXXXXPPPGXGGXXFWAXPXVXPP 632
PP + P +PPP GG PPP + PP
Sbjct: 277 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 336
Query: 633 XKGGXRVXPGXGGXPPKKTXEXRXPXRPGXXKGPLFWGXXQXXPP 767
GG G G PP + + P R P PP
Sbjct: 337 QAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPP 381
Score = 32.3 bits (70), Expect = 0.49
Identities = 36/135 (26%), Positives = 38/135 (28%)
Frame = +3
Query: 441 KXXXPPGXSXXXSXPXXXXXXXXXXXXNPPPXGXGGXXFXXXXXXPPPGXGGXXFWAXPX 620
K PP S P PPP G PPP G
Sbjct: 249 KRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSP------- 301
Query: 621 VXPPXKGGXRVXPGXGGXPPKKTXEXRXPXRPGXXKGPLFWGXXQXXPPPXXXXXXXXA* 800
PP GG P G PP P R G L PPP A
Sbjct: 302 -PPPPAGGSPPPPRAGSPPPP------PPPRGSPPTGSL--------PPPQAGGSPPPA- 345
Query: 801 XKGAPPPPXXKKXXA 845
G+PPPP +K A
Sbjct: 346 GTGSPPPPPRQKRQA 360
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = -2
Query: 679 GGXPPXPGXTRXPPXXGGXTXGXAQKXXPPXPGGGXXXXXXKXXPPXP 536
G PP P PP G PP P GG PP P
Sbjct: 274 GSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPP 321
Score = 30.3 bits (65), Expect = 2.0
Identities = 22/78 (28%), Positives = 24/78 (30%)
Frame = -1
Query: 770 GGRGXLXXXPKKXPFXGSRPXGGPXFPXFFGGXPPXPRXNPXSPLXXGGNGXXXPKXXXP 591
G RG P P P G P P G PP P P G+ P P
Sbjct: 245 GFRGKRQAPPAGSPPPPPPPKGSP--PLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 302
Query: 590 XXRGGGXXXGPKXXPPXP 537
GG P+ P P
Sbjct: 303 PPPAGGSPPPPRAGSPPP 320
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/53 (32%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Frame = -2
Query: 679 GGXPPXPGXTRXPPXXG-GXTXGXAQKXXPPXPGGGXXXXXXKXXPPXPXGGG 524
G PP P PP G G PP P G PP P GG
Sbjct: 256 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGG 308
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 32.7 bits (71), Expect = 0.37
Identities = 24/105 (22%), Positives = 29/105 (27%)
Frame = +3
Query: 453 PPGXSXXXSXPXXXXXXXXXXXXNPPPXGXGGXXFXXXXXXPPPGXGGXXFWAXPXVXPP 632
PP + P +PPP GG PPP + PP
Sbjct: 262 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 321
Query: 633 XKGGXRVXPGXGGXPPKKTXEXRXPXRPGXXKGPLFWGXXQXXPP 767
GG G G PP + + P R P PP
Sbjct: 322 QAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPP 366
Score = 32.3 bits (70), Expect = 0.49
Identities = 36/135 (26%), Positives = 38/135 (28%)
Frame = +3
Query: 441 KXXXPPGXSXXXSXPXXXXXXXXXXXXNPPPXGXGGXXFXXXXXXPPPGXGGXXFWAXPX 620
K PP S P PPP G PPP G
Sbjct: 234 KRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSP------- 286
Query: 621 VXPPXKGGXRVXPGXGGXPPKKTXEXRXPXRPGXXKGPLFWGXXQXXPPPXXXXXXXXA* 800
PP GG P G PP P R G L PPP A
Sbjct: 287 -PPPPAGGSPPPPRAGSPPPP------PPPRGSPPTGSL--------PPPQAGGSPPPA- 330
Query: 801 XKGAPPPPXXKKXXA 845
G+PPPP +K A
Sbjct: 331 GTGSPPPPPRQKRQA 345
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = -2
Query: 679 GGXPPXPGXTRXPPXXGGXTXGXAQKXXPPXPGGGXXXXXXKXXPPXP 536
G PP P PP G PP P GG PP P
Sbjct: 259 GSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPP 306
Score = 30.3 bits (65), Expect = 2.0
Identities = 22/78 (28%), Positives = 24/78 (30%)
Frame = -1
Query: 770 GGRGXLXXXPKKXPFXGSRPXGGPXFPXFFGGXPPXPRXNPXSPLXXGGNGXXXPKXXXP 591
G RG P P P G P P G PP P P G+ P P
Sbjct: 230 GFRGKRQAPPAGSPPPPPPPKGSP--PLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 287
Query: 590 XXRGGGXXXGPKXXPPXP 537
GG P+ P P
Sbjct: 288 PPPAGGSPPPPRAGSPPP 305
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/53 (32%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Frame = -2
Query: 679 GGXPPXPGXTRXPPXXG-GXTXGXAQKXXPPXPGGGXXXXXXKXXPPXPXGGG 524
G PP P PP G G PP P G PP P GG
Sbjct: 241 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGG 293
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 32.7 bits (71), Expect = 0.37
Identities = 23/75 (30%), Positives = 23/75 (30%), Gaps = 1/75 (1%)
Frame = -2
Query: 745 PQKXGPFXXPGLXGXLXSXVFLGGXPPXPGXTRXPPXXGGXTXGXAQKXXPPXPGG-GXX 569
P GP PG G G P P PP G G Q P GG G
Sbjct: 248 PGGPGPAGPPGPPGPPGQDGSGGAAQPGPPGPPGPPGNDGQPGGPGQPGGPGQDGGPGTD 307
Query: 568 XXXXKXXPPXPXGGG 524
P P GGG
Sbjct: 308 AAYCPCPPRTPAGGG 322
>Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical
protein C09G5.5 protein.
Length = 317
Score = 31.1 bits (67), Expect = 1.1
Identities = 25/93 (26%), Positives = 26/93 (27%)
Frame = -1
Query: 737 KXPFXGSRPXGGPXFPXFFGGXPPXPRXNPXSPLXXGGNGXXXPKXXXPXXRGGGXXXGP 558
K P P G P P P P NP +P GG G P G G
Sbjct: 133 KCPQGAPGPAGAPGNPG-----PQGPNGNPGAPAHGGGQGPPGP-PGPAGDAGSPGQAGA 186
Query: 557 KXXPPXPXGXGVXXXXXXGXXXXPGXGXXXGXP 459
P P G G PG G P
Sbjct: 187 PGNPGRPGQSGQRSRGLPGPSGRPGPQGPPGAP 219
>U42841-13|AAC48170.1| 682|Caenorhabditis elegans Hypothetical
protein T17H7.1 protein.
Length = 682
Score = 30.7 bits (66), Expect = 1.5
Identities = 25/87 (28%), Positives = 27/87 (31%)
Frame = -1
Query: 821 GGGGPFXLGXXXXXXXXGGRGXLXXXPKKXPFXGSRPXGGPXFPXFFGGXPPXPRXNPXS 642
GG G G GGRG + F G R GGP GG P P
Sbjct: 399 GGRGGRGQGPDFGPGRQGGRGQGPDFGPQDDFSGRRGSGGPGGR---GGRGQEPDFGPGG 455
Query: 641 PLXXGGNGXXXPKXXXPXXRGGGXXXG 561
G P+ P RG G G
Sbjct: 456 QGGRGQGPDFGPQDDFPGRRGSGGPEG 482
Score = 28.3 bits (60), Expect = 7.9
Identities = 29/99 (29%), Positives = 31/99 (31%)
Frame = -1
Query: 821 GGGGPFXLGXXXXXXXXGGRGXLXXXPKKXPFXGSRPXGGPXFPXFFGGXPPXPRXNPXS 642
GG G G GGRG + F G R GGP GG P P
Sbjct: 304 GGRGGRGQGPDFGPGGQGGRGQGPDFGPQDDFPGRRGSGGPGGR---GGRGQGPDFEPQD 360
Query: 641 PLXXGGNGXXXPKXXXPXXRGGGXXXGPKXXPPXPXGXG 525
G G P RG G GP+ P G G
Sbjct: 361 DF-PGRRGSGGP--GRRGGRGQGPDFGPQDDFPGRRGSG 396
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 30.3 bits (65), Expect = 2.0
Identities = 26/89 (29%), Positives = 28/89 (31%), Gaps = 1/89 (1%)
Frame = -1
Query: 722 GSRPXGGPXFPXFFGGXPPXPRXNPXSPLXXGGNGXXXPKXXXPXXRGGGXXXGPKXXPP 543
G+ P GG P G P P N P G G P +G GP PP
Sbjct: 193 GNTPSGGAAGPPGPPGPPGGP-GNDGQPGGPGNPGAPGAVTEVPGQQGPPGPPGPAG-PP 250
Query: 542 XPXGX-GVXXXXXXGXXXXPGXGXXXGXP 459
P G G G PG G P
Sbjct: 251 GPAGNAGQAGYAQPGPAGPPGDAGPDGAP 279
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 30.3 bits (65), Expect = 2.0
Identities = 25/83 (30%), Positives = 25/83 (30%), Gaps = 2/83 (2%)
Frame = -1
Query: 707 GGPXFPXFFGGXP--PXPRXNPXSPLXXGGNGXXXPKXXXPXXRGGGXXXGPKXXPPXPX 534
GGP P G P P P NP SP G G P G G P P
Sbjct: 152 GGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPP-------GPAGPAGNDGAPGAPG 204
Query: 533 GXGVXXXXXXGXXXXPGXGXXXG 465
G G G PG G
Sbjct: 205 GPGEPGASEQGGPGEPGPAGPPG 227
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 30.3 bits (65), Expect = 2.0
Identities = 25/83 (30%), Positives = 25/83 (30%), Gaps = 2/83 (2%)
Frame = -1
Query: 707 GGPXFPXFFGGXP--PXPRXNPXSPLXXGGNGXXXPKXXXPXXRGGGXXXGPKXXPPXPX 534
GGP P G P P P NP SP G G P G G P P
Sbjct: 152 GGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPP-------GPAGPAGNDGAPGAPG 204
Query: 533 GXGVXXXXXXGXXXXPGXGXXXG 465
G G G PG G
Sbjct: 205 GPGEPGASEQGGPGEPGPAGPPG 227
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 30.3 bits (65), Expect = 2.0
Identities = 25/83 (30%), Positives = 25/83 (30%), Gaps = 2/83 (2%)
Frame = -1
Query: 707 GGPXFPXFFGGXP--PXPRXNPXSPLXXGGNGXXXPKXXXPXXRGGGXXXGPKXXPPXPX 534
GGP P G P P P NP SP G G P G G P P
Sbjct: 152 GGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPP-------GPAGPAGNDGAPGAPG 204
Query: 533 GXGVXXXXXXGXXXXPGXGXXXG 465
G G G PG G
Sbjct: 205 GPGEPGASEQGGPGEPGPAGPPG 227
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 30.3 bits (65), Expect = 2.0
Identities = 25/83 (30%), Positives = 25/83 (30%), Gaps = 2/83 (2%)
Frame = -1
Query: 707 GGPXFPXFFGGXP--PXPRXNPXSPLXXGGNGXXXPKXXXPXXRGGGXXXGPKXXPPXPX 534
GGP P G P P P NP SP G G P G G P P
Sbjct: 152 GGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPP-------GPAGPAGNDGAPGAPG 204
Query: 533 GXGVXXXXXXGXXXXPGXGXXXG 465
G G G PG G
Sbjct: 205 GPGEPGASEQGGPGEPGPAGPPG 227
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 30.3 bits (65), Expect = 2.0
Identities = 26/89 (29%), Positives = 28/89 (31%), Gaps = 1/89 (1%)
Frame = -1
Query: 722 GSRPXGGPXFPXFFGGXPPXPRXNPXSPLXXGGNGXXXPKXXXPXXRGGGXXXGPKXXPP 543
G+ P GG P G PP P NP + G G P G GP PP
Sbjct: 199 GNTPSGGGEGPAGPPG-PPGPAGNPGTDGAPGNPGAPGQVTETPGTPGPAGAAGP-PGPP 256
Query: 542 XPXG-XGVXXXXXXGXXXXPGXGXXXGXP 459
P G G G G G P
Sbjct: 257 GPAGNPGSAGASEPGPAGPAGDAGPDGAP 285
>Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.6 protein.
Length = 316
Score = 29.9 bits (64), Expect = 2.6
Identities = 23/85 (27%), Positives = 24/85 (28%)
Frame = -1
Query: 713 PXGGPXFPXFFGGXPPXPRXNPXSPLXXGGNGXXXPKXXXPXXRGGGXXXGPKXXPPXPX 534
P G P P P P NP +P GG G P P G G P P
Sbjct: 143 PAGAPGQPG-----PKGPNGNPGAPAQGGGQGPPGP----PGPAGSAGSPGQAGAPGNPG 193
Query: 533 GXGVXXXXXXGXXXXPGXGXXXGXP 459
G G G G P
Sbjct: 194 SPGKSGQRGRGLPGPSGAPGSQGPP 218
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 29.1 bits (62), Expect = 4.5
Identities = 19/71 (26%), Positives = 20/71 (28%)
Frame = -1
Query: 671 PPXPRXNPXSPLXXGGNGXXXPKXXXPXXRGGGXXXGPKXXPPXPXGXGVXXXXXXGXXX 492
P P NP +P GG G P P G G P P G G
Sbjct: 152 PKGPNGNPGAPAQGGGQGPPGP----PGPAGSAGSPGQAGAPGNPGSPGKSGQRGRGLPG 207
Query: 491 XPGXGXXXGXP 459
G G P
Sbjct: 208 PSGAPGPQGPP 218
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.7 bits (61), Expect = 6.0
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Frame = -1
Query: 731 PFXGSRPX--GGPXF---PXFFGGXPPXPRXNPXSPLXXGGNGXXXPKXXXPXXRGGGXX 567
P G P GGP P F G PP P SP+ G + + P RGGG
Sbjct: 1484 PMRGGGPPMRGGPPMRGGPPMFRGGPPGPGRGMPSPMMRGSS----MRGGFP-QRGGGPG 1538
Query: 566 XGP 558
GP
Sbjct: 1539 MGP 1541
>AL033514-8|CAA22097.2| 715|Caenorhabditis elegans Hypothetical
protein Y75B8A.8 protein.
Length = 715
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -1
Query: 620 GXXXPKXXXPXXRGGGXXXGPKXXPPXPXGXGV 522
G P GGG GP PP P G GV
Sbjct: 6 GPGGPMYGGAGGGGGGPPRGPPQQPPQPQGGGV 38
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,484,865
Number of Sequences: 27780
Number of extensions: 222339
Number of successful extensions: 801
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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