Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_G11
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    60   4e-10
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    26   6.4  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   6.4  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    26   8.5  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    26   8.5  

>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 60.1 bits (139), Expect = 4e-10
 Identities = 25/91 (27%), Positives = 46/91 (50%)
 Frame = +1

Query: 394 VESQVGSVRPYILCCIIKDLNFTDILFKKFIQMQTRLHDTVCDKRNVATIATHDLNKLPP 573
           +  +   +RPY    I++ +    I ++ FI +Q +LH  +C  R +  I THD + +  
Sbjct: 97  ISPETSEIRPYAAAAILRGVKLDPIRYQSFIALQDKLHANLCRNRTLVAIGTHDFSVM-E 155

Query: 574 GDLVYTAKPPSMLSLIPLMRTKPYTGEQLVQ 666
           G   Y A  P  ++ +PL +T+   G  L++
Sbjct: 156 GPFTYEALKPEEINFVPLNQTQEINGSNLLE 186


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 600 SVNAKPYSVNEDKTLHRRTTSPAVSSRSGSTQEGEKKKCLLGDP*VPVPVRRQSS 764
           S+ + P SV     +H+RT S   ++  GST   +    +  +P +P+P R Q S
Sbjct: 158 SLLSLPKSVPHSPAMHKRTPSSDPNNPFGSTFANKFLDHIPAEP-LPLPARPQIS 211


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 566  NLLRSCVAIVATFLLSQTVSCSLVCICINFLNNISVKFRSFI 441
            N+ R C+   + F+    +S   + I  N +N +SV F+SF+
Sbjct: 1206 NMSRICLRETSLFISPLMLSTLDMIIAENNVNEVSVLFKSFL 1247


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +1

Query: 577 DLVYTAKPPSMLSLIPLMRTKPYTGEQLVQQLVAEAEALRKEKKRNVYSGIHKYLYLL-- 750
           DL  T    ++ SL+   + +      L+   V +  ++RKEKKRN    I+    LL  
Sbjct: 242 DLHGTNLEKALSSLLASQKKQFIRNLALLDMAVGKQRSVRKEKKRNPEESIYFSTILLRE 301

Query: 751 EGKAVYACLKIIG 789
           E K++ +  K+ G
Sbjct: 302 ETKSLISPKKLPG 314


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 355 ILHVSDDVLNVKIVESQVGSVRPYILCCIIK 447
           +L V+  ++N  ++  +   +R Y LCCI++
Sbjct: 47  VLPVARSLVNNNLLHHKDKGIRSYTLCCIVE 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,027,828
Number of Sequences: 5004
Number of extensions: 60491
Number of successful extensions: 186
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)