Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_G11
         (907 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    28   0.13 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   3.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.7  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 561 QITSR*SCVHSKASVNAKPYSVNEDKTLHRRTTSPAVSSRSGSTQEGEKKK 713
           ++ +R + VHS+AS NA   + +E+    + TTS     R  S +  EK K
Sbjct: 738 RVENRSAIVHSEASANANSSTSSEESREEKATTSLEAEKREKS-EHCEKGK 787


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +2

Query: 251 KQNKLNSHP---NPKQKKERKKNLIQKMWKLNC 340
           K    N HP   NP   K + KN+I+K+ ++NC
Sbjct: 451 KHELANVHPVGINPG--KMQLKNIIKKLLQINC 481


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 148 LNLKGNKLSDKRFMKLVDQCRTKQ 219
           L +K NKL+      +++Q RTK+
Sbjct: 92  LAVKDNKLASNAGYNVIEQVRTKE 115


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 148 LNLKGNKLSDKRFMKLVDQCRTKQ 219
           L +K NKL+      +++Q RTK+
Sbjct: 92  LAVKDNKLASNAGYNVIEQVRTKE 115


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 148 LNLKGNKLSDKRFMKLVDQCRTKQ 219
           L +K NKL+      +++Q RTK+
Sbjct: 92  LAVKDNKLASNAGYNVIEQVRTKE 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,348
Number of Sequences: 438
Number of extensions: 4146
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)