Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_G09
         (887 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    49   1e-04
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    47   7e-04
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    40   0.064
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.11 
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    38   0.26 
UniRef50_Q3EYP1 Cluster: N-acetylmuramoyl-L-alanine amidase; n=1...    36   1.4  
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    34   5.6  
UniRef50_Q14M86 Cluster: Putative uncharacterized protein; n=1; ...    33   7.4  

>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 49.2 bits (112), Expect = 1e-04
 Identities = 28/55 (50%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +3

Query: 690 CINESANARGEAVCVLGALPXPRSLTRCARSFGCGERXXL-TXXX*YGYPQNXGI 851
           CI + A AR EAV VL ALP  RS TRC RS GCG      +    YG PQ  G+
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGM 320


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 46.8 bits (106), Expect = 7e-04
 Identities = 21/33 (63%), Positives = 23/33 (69%)
 Frame = +3

Query: 714 RGEAVCVLGALPXPRSLTRCARSFGCGERXXLT 812
           R   +C  G +P PRSLTR ARSFGCGER  LT
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 40.3 bits (90), Expect = 0.064
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = +1

Query: 493 DPDMIRYIDXFGQTTTXMQ 549
           DPDMIRYID FGQTTT MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.5 bits (88), Expect = 0.11
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = -2

Query: 742 APNTQTASPRALADSLMQ 689
           APNTQTASPRALADSLMQ
Sbjct: 331 APNTQTASPRALADSLMQ 348


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 38.3 bits (85), Expect = 0.26
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +1

Query: 688 SALMNRPTXGERRFAYW 738
           +ALMNRPT GERRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_Q3EYP1 Cluster: N-acetylmuramoyl-L-alanine amidase; n=1;
           Bacillus thuringiensis serovar israelensis ATCC
           35646|Rep: N-acetylmuramoyl-L-alanine amidase - Bacillus
           thuringiensis serovar israelensis ATCC 35646
          Length = 411

 Score = 35.9 bits (79), Expect = 1.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 213 DWQAEPLPNTRSTKTSAEQHHSLLTWSQISCTTVA 317
           DW+ E LP ++ +  + E+H SL  W Q S T +A
Sbjct: 258 DWEEEKLPESKKSDLALEEHRSLEKWKQESDTPIA 292


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 33.9 bits (74), Expect = 5.6
 Identities = 16/25 (64%), Positives = 16/25 (64%)
 Frame = -1

Query: 869 TXFFXGYPXILWIXVLPXXSELXPL 795
           T  F  YP ILWI VLP  SEL PL
Sbjct: 26  TCSFRLYPLILWITVLPPLSELTPL 50


>UniRef50_Q14M86 Cluster: Putative uncharacterized protein; n=1;
           Spiroplasma citri|Rep: Putative uncharacterized protein
           - Spiroplasma citri
          Length = 326

 Score = 33.5 bits (73), Expect = 7.4
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -3

Query: 669 PLNLKHKMNAIVVXNLFIAAYNGYK*S-NSITNFTNKAFFSLHXSCGLSKXINVSYHVWI 493
           P+NL H  +  V  N+ I  Y+GY  +  SI   T     +L  +  +SK  N+ Y+ ++
Sbjct: 138 PVNLPHLSDFKVNDNIIIGQYHGYNFNFGSINQATTTVVDNLQPNL-ISKPYNLQYYCYL 196

Query: 492 XLTL 481
            LT+
Sbjct: 197 FLTI 200


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 612,718,045
Number of Sequences: 1657284
Number of extensions: 9914640
Number of successful extensions: 25227
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 24398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25222
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79932179145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)