Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_G09
         (887 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0697 - 31301794-31302034,31302672-31303329,31303896-313040...    30   2.1  
04_01_0105 + 1098551-1100392                                           29   6.5  
07_03_0423 + 18035688-18036572,18036659-18036978,18052618-180527...    28   8.6  

>01_06_0697 -
           31301794-31302034,31302672-31303329,31303896-31304091,
           31304169-31304396,31304497-31304925,31305043-31305249,
           31305442-31305633,31305772-31306143
          Length = 840

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +3

Query: 183 NFCRTMNPGVDWQAEPLPNTRSTKTSAEQHHS-LLTWSQISCTTVAPAGSVKL 338
           N C  +   +D  A+P P      T  EQ HS + +W  I+     P  S+KL
Sbjct: 395 NICTHLRSLLDGAADPAPELWGKTTEEEQMHSGIGSWPGINMPVKPPNSSLKL 447


>04_01_0105 + 1098551-1100392
          Length = 613

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 212 DSGVHSATEIVSSILEILGPLXRLDAVLAVVGSV 111
           D GV    +I++ +++ILG   RLD   A+V S+
Sbjct: 370 DHGVEPTPDILACVVDILGRAGRLDEAYAMVTSM 403


>07_03_0423 +
           18035688-18036572,18036659-18036978,18052618-18052724,
           18053001-18053104,18054129-18054328,18054422-18054522,
           18054695-18054841,18055007-18055166,18055287-18055368,
           18056070-18056336,18056846-18056973,18057513-18057672
          Length = 886

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 110 KRILRLPAQHRAXSEDPGSQGLTKQFLSHYEPRSRLAGRAT 232
           KR L L           G++GL  +   H  PR +LAGR T
Sbjct: 344 KRKLMLNDDEGDDGNKSGNKGLPNKLPKHTTPRKKLAGRPT 384


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,686,073
Number of Sequences: 37544
Number of extensions: 280805
Number of successful extensions: 843
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)