Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_G07
(896 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 167 2e-42
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 98 2e-21
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 61 2e-10
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 59 7e-10
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 56 7e-09
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 54 2e-08
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 50 3e-07
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 48 1e-06
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 48 2e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 47 3e-06
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 46 6e-06
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 46 6e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 46 7e-06
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 45 2e-05
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 44 2e-05
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 44 4e-05
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 43 7e-05
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 42 9e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 41 2e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.001
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 38 0.001
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 38 0.002
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 38 0.003
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 38 0.003
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 37 0.003
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 37 0.003
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 36 0.008
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 36 0.010
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 34 0.024
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 34 0.024
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.055
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 31 0.17
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 30 0.51
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 30 0.51
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 29 0.90
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 1.6
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 27 2.7
SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces po... 27 3.6
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 27 3.6
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 27 3.6
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 26 6.3
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 26 8.4
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 26 8.4
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual 26 8.4
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 26 8.4
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 167 bits (406), Expect = 2e-42
Identities = 75/170 (44%), Positives = 116/170 (68%)
Frame = +1
Query: 193 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 372
E GK+F+GGL+WET+ ++L+ YF ++GEV+DC VM++S +GRSRGFGF+TF +P VN V
Sbjct: 161 EDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220
Query: 373 LQNGPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVM 552
+ H LDG+ IDPK PR Q+ K+F+GG+P + TE + R FF ++G+V+
Sbjct: 221 MSK-EHHLDGKIIDPKRAIPREEQEKT-----AKMFVGGVPGDCTEEEFRNFFNQFGRVL 274
Query: 553 EVVIMYDQEXKKSRGFGFLSFEDEISVXXVTQXHFINLNGXQVEIXRAXP 702
+ +M D++ + RGFGF+++E+E +V +I ++G VE+ RA P
Sbjct: 275 DATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATP 324
Score = 66.1 bits (154), Expect = 6e-12
Identities = 25/84 (29%), Positives = 51/84 (60%)
Frame = +1
Query: 184 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 363
+ ++ K+FVGG+ + ++E + +F+++G V+D +M + ++GR RGFGFVT+ + S V
Sbjct: 242 EQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAV 301
Query: 364 NLVLQNGPHQLDGRTIDPKPCNPR 435
+ + G+ ++ K P+
Sbjct: 302 EATMSQPYITIHGKPVEVKRATPK 325
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 97.9 bits (233), Expect = 2e-21
Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 15/197 (7%)
Frame = +1
Query: 184 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 363
D +E +FVG LSW + L + F YG ++ V+ + +SGRS+G+G+V F P
Sbjct: 258 DSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAA 317
Query: 364 N-LVLQNGPHQLDGRTI-----DPKPCNPRTLQKPKRGG-----GYPK--VFLGGLPSNV 504
V NG ++DGR + +P+P NP+ + + G P VF+G L N
Sbjct: 318 KAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNA 377
Query: 505 TETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSFEDEISVXXVTQ--XHFINLNGXQ 678
TE DL FG G + + + D + + +GFG+++F D S + HFI +
Sbjct: 378 TEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCR 437
Query: 679 VEIXRAXPXXGSXXXRG 729
++ GS RG
Sbjct: 438 LDFSTPRTGGGSRGGRG 454
Score = 49.6 bits (113), Expect = 6e-07
Identities = 28/96 (29%), Positives = 47/96 (48%)
Frame = +1
Query: 178 DMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 357
D + +FVG LS+ ++++L F G++ + + +SGR +GFG+VTF+D
Sbjct: 359 DQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDID 418
Query: 358 LVNLVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGGG 465
++ H + GR PC P+ GGG
Sbjct: 419 SAKKCVEMNGHFIAGR-----PCR-LDFSTPRTGGG 448
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 60.9 bits (141), Expect = 2e-10
Identities = 42/171 (24%), Positives = 80/171 (46%), Gaps = 5/171 (2%)
Frame = +1
Query: 199 GKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ 378
G +F+ L + L FS +G+++ C V + E G ++G+GFV F N ++
Sbjct: 168 GNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIE 226
Query: 379 --NGPHQLDGRTIDPKPCNPRTLQKPKRG--GGYPKVFLGGLPSNVTETDLRVFFGRYGK 546
NG D + + R Q + V++ L + +TE + FG++G+
Sbjct: 227 HVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGE 286
Query: 547 VMEVVIMYDQEXKKSRGFGFLSFED-EISVXXVTQXHFINLNGXQVEIXRA 696
+ + ++ DQ K RGFGF+++ + E + V + + G ++ + RA
Sbjct: 287 ITSLSLVKDQN-DKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRA 336
Score = 42.7 bits (96), Expect = 7e-05
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +1
Query: 205 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN-LVLQN 381
LF+ L E E L+ FS +G + +M + E G+S+GFGFV + P N V +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEM 424
Query: 382 GPHQLDGRTI 411
L G+ +
Sbjct: 425 NQRMLAGKPL 434
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 59.3 bits (137), Expect = 7e-10
Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 15/175 (8%)
Frame = +1
Query: 205 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA---DPSLVNLVL 375
LFV L+++T Q++L +FS G + VV+ N E+G +RG+GFVTF+ D L
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 376 QNGPHQLDGRTIDPKPCNPR-----------TLQKPKRGGGYPKVFLGGLPSNVTETD-L 519
+N +L GR + PR ++K R P++ + LP ++ + L
Sbjct: 67 KN--KKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHL 124
Query: 520 RVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSFEDEISVXXVTQXHFINLNGXQVE 684
F ++GKV E+ I + + GF F+ +D + +LNG +++
Sbjct: 125 EPHFSKFGKVREIKIP-TKGGGRMCGFAFVWMKDR----KAAEEAMNSLNGTEID 174
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 56.0 bits (129), Expect = 7e-09
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 4/154 (2%)
Frame = +1
Query: 175 RDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 354
RD + +K L++G L ++ +Q+ ++ G+ + +++N +G + G+ FV FA P
Sbjct: 85 RDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASP 144
Query: 355 SLVNLVLQNGPHQLDGRTIDPK---PCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDL-R 522
+ + + G K +K +F+G L NV E D+
Sbjct: 145 HEASSAMSMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYS 204
Query: 523 VFFGRYGKVMEVVIMYDQEXKKSRGFGFLSFEDE 624
+F RY IM D + SRG+GF+ F DE
Sbjct: 205 LFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDE 238
Score = 31.5 bits (68), Expect = 0.17
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +1
Query: 187 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 351
D +FVGGLS S+E L+ F +GE++ + +G GFV F +
Sbjct: 299 DTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPP------GKGCGFVQFVN 347
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 54.4 bits (125), Expect = 2e-08
Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 14/145 (9%)
Frame = +1
Query: 229 ETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNGPHQLDGRT 408
E S+EN++ + I + M + +++GF +V FA + L LQ L+GR
Sbjct: 135 EVSEENIKPITTEQITRIH-MPMSKEKRFQNKGFAYVDFATEDALKLALQCSEKALNGRN 193
Query: 409 I--------DPKPCNP-RTLQKPKRGGGYPK-----VFLGGLPSNVTETDLRVFFGRYGK 546
I +P P TL K K +F+G L T+ DL+ FG+ G+
Sbjct: 194 ILIKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQ 253
Query: 547 VMEVVIMYDQEXKKSRGFGFLSFED 621
+ V +M ++ K +GFGF+ F D
Sbjct: 254 IRRVRLMTFEDTGKCKGFGFVDFPD 278
Score = 45.6 bits (103), Expect = 1e-05
Identities = 19/49 (38%), Positives = 32/49 (65%)
Frame = +1
Query: 205 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 351
LFVG L +ET+ +L+ +F + G++ +M ++G+ +GFGFV F D
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPD 278
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 50.4 bits (115), Expect = 3e-07
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Frame = +1
Query: 181 MDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSL 360
M D K +FVG L++E +E L RYF G + ++++ ++ +GF ++ F D
Sbjct: 264 MPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMG 323
Query: 361 VN-LVLQNGPHQLDGRTI---DPKPCNPRTLQKPKRG 459
V+ +L N +GRT+ K P+++ + KRG
Sbjct: 324 VDKALLLNEKKMPEGRTLRIMRAKSTKPKSITRSKRG 360
Score = 34.7 bits (76), Expect = 0.018
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 475 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSFEDEISV 633
VF+G L E L +FG G + V I+ D + +GF ++ F+D + V
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGV 324
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 48.4 bits (110), Expect = 1e-06
Identities = 32/159 (20%), Positives = 72/159 (45%), Gaps = 10/159 (6%)
Frame = +1
Query: 184 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 363
++ ++ +FV L+ + L +F + G V D ++++ SGRS+G +V F V
Sbjct: 235 EERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSV 294
Query: 364 NLVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGG----------GYPKVFLGGLPSNVTET 513
+ +L G + + +K + + ++ + + N+T+
Sbjct: 295 QAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDE 354
Query: 514 DLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSFEDEIS 630
D++ F +G + E V + + +S+GFG++ + + IS
Sbjct: 355 DVKAIFEPFGDI-EFVHLQRDDQNRSKGFGYIQYRNPIS 392
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 47.6 bits (108), Expect = 2e-06
Identities = 23/57 (40%), Positives = 34/57 (59%)
Frame = +1
Query: 184 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 354
++D K LFVG L ++S E LQ +F R G+V + + SGR +G+ FV F +P
Sbjct: 87 NNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINP 143
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 47.2 bits (107), Expect = 3e-06
Identities = 17/66 (25%), Positives = 40/66 (60%)
Frame = +1
Query: 184 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 363
D + +++G L ++ +++++ FS +GE +D ++++ E+G+S+GF F+ + D
Sbjct: 26 DYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRST 85
Query: 364 NLVLQN 381
L + N
Sbjct: 86 VLAVDN 91
Score = 45.2 bits (102), Expect = 1e-05
Identities = 17/52 (32%), Positives = 34/52 (65%)
Frame = +1
Query: 475 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSFEDEIS 630
+++G L ++ E D+ F +G+ +++ ++ D+E KS+GF FL +ED+ S
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRS 84
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 46.4 bits (105), Expect = 6e-06
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +1
Query: 178 DMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 357
D + + ++VG + + + E LQ +F+ G V ++ + +G +GF ++ F++PS
Sbjct: 48 DKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPS 107
Query: 358 LV-NLVLQNG 384
LV N +L NG
Sbjct: 108 LVPNALLLNG 117
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 46.4 bits (105), Expect = 6e-06
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Frame = +1
Query: 187 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF--ADPSL 360
D +LFVG L + + E+L + FS Y ++ V+++ E G++RGFGFV+F +D L
Sbjct: 26 DPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFL 84
Query: 361 VNLVLQNG------PHQLDGRTIDPKP--CNPRTLQKPKRGGGYPKVFLGG 489
+NG P +L T D KP N +T+ R Y + G
Sbjct: 85 KAWREKNGKYIGSRPVKLSRATSDVKPNEVNEKTIDSKIRNSLYSRTIHHG 135
Score = 40.3 bits (90), Expect = 4e-04
Identities = 18/50 (36%), Positives = 33/50 (66%)
Frame = +1
Query: 472 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSFED 621
++F+G L ++V + L F Y +++ ++ D+E K+RGFGF+SF+D
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREG-KTRGFGFVSFKD 79
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 46.0 bits (104), Expect = 7e-06
Identities = 21/47 (44%), Positives = 30/47 (63%)
Frame = +1
Query: 475 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSF 615
+F+ G+ S + E +L+ F ++G V V IM + K SRGFGFLSF
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSF 149
Score = 44.0 bits (99), Expect = 3e-05
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Frame = +1
Query: 205 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN- 381
LFV G++ ++ LQ+ FS++G V +M+ + SRGFGF++F+ + N
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 382 GPHQLDGRTIDPKPCNPRTLQKPKRG 459
+ GR ++ + P G
Sbjct: 163 NSQEFYGRVLNVQKAKRSRPHSPTPG 188
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 44.8 bits (101), Expect = 2e-05
Identities = 19/57 (33%), Positives = 35/57 (61%)
Frame = +1
Query: 175 RDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 345
R + D +F+ LS++T + +++R F+RYG + V++N +G+S G+ FV F
Sbjct: 92 RHVIGDPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVF 148
Score = 37.5 bits (83), Expect = 0.003
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +1
Query: 457 GGGYPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSFEDE 624
G Y +FL L + E+D+ F RYG + + ++ ++ KS G+ F+ FE E
Sbjct: 96 GDPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERE 151
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 44.4 bits (100), Expect = 2e-05
Identities = 19/52 (36%), Positives = 31/52 (59%)
Frame = +1
Query: 475 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSFEDEIS 630
V++ GLP N ++ +L ++ R+GKV + D E +G+GF FE+E S
Sbjct: 298 VYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKS 349
Score = 42.3 bits (95), Expect = 9e-05
Identities = 33/139 (23%), Positives = 64/139 (46%)
Frame = +1
Query: 205 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 384
+++ GL TS ENL Y +R+G+V + + E+ +G+GF F + L+ +
Sbjct: 298 VYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSA-LICISA 356
Query: 385 PHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVI 564
+ K LQ + +++ LP + E+D+ F + K++ +
Sbjct: 357 MTLCGYQCSFAKESFSARLQS-LQDTESTNLYISNLPLHWNESDISTLF-KPSKIISNRV 414
Query: 565 MYDQEXKKSRGFGFLSFED 621
+ D + ++SRG GF +D
Sbjct: 415 LRDSK-EQSRGVGFARMQD 432
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 43.6 bits (98), Expect = 4e-05
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = +1
Query: 190 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 351
D+ L V LS +T +E L+ F R+G + + K+ E+GR++GF FV++ D
Sbjct: 199 DDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYD 252
Score = 36.3 bits (80), Expect = 0.006
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +1
Query: 490 LPSNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSFED 621
L + E +LR F R+G + V + D+E +++GF F+S+ D
Sbjct: 209 LSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYD 252
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 42.7 bits (96), Expect = 7e-05
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +1
Query: 205 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 345
LFV L+ T E+L+ FSR+G++I C V+++ E+G S + F+ F
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEF 292
Score = 33.9 bits (74), Expect = 0.032
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +1
Query: 508 ETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSFEDEISV 633
+ DL + F R+GK++ ++ D+E S + F+ F+++ SV
Sbjct: 257 DEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESV 298
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 42.3 bits (95), Expect = 9e-05
Identities = 18/62 (29%), Positives = 37/62 (59%)
Frame = +1
Query: 193 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 372
+KG L+VG L ++ ++ YFS++G V+ + +N ++G S+ + F+ F + N+V
Sbjct: 103 KKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVV 162
Query: 373 LQ 378
+
Sbjct: 163 AE 164
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 41.1 bits (92), Expect = 2e-04
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 9/144 (6%)
Frame = +1
Query: 220 LSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNGPHQLD 399
L + ++L+ F + G VI + N E GRSRG G V + +Q H D
Sbjct: 190 LPYNVRWQDLKDLFRQAGSVIRADIQMNQE-GRSRGIGIVVMSSMKEAMHAIQM-LHNTD 247
Query: 400 --GRTIDPK-------PCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVM 552
GRT++ + G +++G LP ++ +L F G V+
Sbjct: 248 FMGRTLEVRLDRFAHHKIEDLVYHAYPHGPCSDCIYVGNLPWATSDRNLLDLFTDIGSVI 307
Query: 553 EVVIMYDQEXKKSRGFGFLSFEDE 624
I Y+ + S+GFG + FE+E
Sbjct: 308 RARIAYEPTGR-SKGFGVVQFENE 330
Score = 39.1 bits (87), Expect = 8e-04
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +1
Query: 205 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 345
++VG L W TS NL F+ G VI + +GRS+GFG V F
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARI-AYEPTGRSKGFGVVQF 327
Score = 31.9 bits (69), Expect = 0.13
Identities = 12/52 (23%), Positives = 31/52 (59%)
Frame = +1
Query: 193 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 348
++ +++VG LS++ L+ + + G V++C ++ N +G S+G + ++
Sbjct: 64 QERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL-NLPNGLSKGCAIIEYS 114
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 38.3 bits (85), Expect = 0.001
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Frame = +1
Query: 205 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 384
++VG + +E ++E + F + G V ++ + ESG+ +G+GF + DP+ ++N
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 385 PHQLDG----RTIDPKPCNPRTLQK---PKRGGGYPKVF 480
+ G R P R L K P R G YP+ +
Sbjct: 67 NNYDAGTRRLRVDFPTADQIRRLDKLLGPSRYGYYPQSY 105
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 38.3 bits (85), Expect = 0.001
Identities = 24/74 (32%), Positives = 37/74 (50%)
Frame = +1
Query: 481 LGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSFEDEISVXXVTQXHFI 660
+G L ++TE DL FFG V + ++ D ++SRGFG++ FE ++
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 661 NLNGXQVEIXRAXP 702
+L G V I A P
Sbjct: 156 DLMGRPVRITVAEP 169
Score = 34.3 bits (75), Expect = 0.024
Identities = 23/75 (30%), Positives = 35/75 (46%)
Frame = +1
Query: 211 VGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNGPH 390
VG LS++ ++ +L +F I V+ +E RSRGFG+V F ++ L
Sbjct: 98 VGNLSFDLTENDLGDFFGEGVTSIRLVIDPLTE--RSRGFGYVEFETADTLSAALALSGE 155
Query: 391 QLDGRTIDPKPCNPR 435
L GR + PR
Sbjct: 156 DLMGRPVRITVAEPR 170
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 37.9 bits (84), Expect = 0.002
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +1
Query: 190 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 357
D K K+++ L ++ + +G+++ ++KN G S+GF F F +PS
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPS 362
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 37.5 bits (83), Expect = 0.003
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +1
Query: 472 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSFED 621
++FL L + E DL+ FG +G++ +V + D++ +GF ++ F D
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHD 373
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 37.5 bits (83), Expect = 0.003
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 475 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSFED 621
VF+G +P +V+E + F + G V ++ D E +G+GF F D
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFD 57
Score = 36.3 bits (80), Expect = 0.006
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +1
Query: 205 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 351
+FVG + ++ S++ + F++ G V ++ + E+G +G+GF F D
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFD 57
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 37.1 bits (82), Expect = 0.003
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Frame = +1
Query: 244 NLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNGPHQLDGRTIDPKP 423
++ + FS YG V+D V + +R F +V P + LQ L+ +
Sbjct: 681 DITKLFSAYGNVVD-VRFPSLRYNTNRRFCYVQMRKPDEAHNALQLHKKLLEEKYPIQVF 739
Query: 424 CNPRTLQKPKRGGGYP--KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRG 597
+ + P+ G Y ++++ + V E D+ FF YG+V V I + + +G
Sbjct: 740 ISDPLRRTPRSGAVYEGRELYVTNIDFKVNEKDVETFFRDYGQVESVRI--PKRFNQHKG 797
Query: 598 FGFL 609
FG++
Sbjct: 798 FGYV 801
Score = 32.3 bits (70), Expect = 0.096
Identities = 15/71 (21%), Positives = 34/71 (47%)
Frame = +1
Query: 475 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSFEDEISVXXVTQXH 654
V + LPS+++E +L++FF G ++ + I+ D + K + F + V
Sbjct: 592 VLVTNLPSDISENELKIFFKDCGNIIRIFILEDNQ--KDVKVAQIEFSETSEVLAAKTRD 649
Query: 655 FINLNGXQVEI 687
++ G ++ +
Sbjct: 650 LKSIRGHEISV 660
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 37.1 bits (82), Expect = 0.003
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +1
Query: 205 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 345
LFVG L + L FS G+++ + E+GRS+G+GFV++
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSY 147
Score = 34.7 bits (76), Expect = 0.018
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +1
Query: 475 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSFEDEISVXXVTQ-X 651
++LG L VT++ L + G V+ + I D+ GFGF F E V Q
Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72
Query: 652 HFINLNGXQVEIXRAXPXXG 711
+ + L G + + RA G
Sbjct: 73 NQVKLFGKPIRVNRASQDRG 92
Score = 33.5 bits (73), Expect = 0.042
Identities = 31/146 (21%), Positives = 60/146 (41%), Gaps = 1/146 (0%)
Frame = +1
Query: 184 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 363
D ++ +++G L + + L + G V++ + ++ GFGF F V
Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDV 65
Query: 364 NLVLQN-GPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRVFFGRY 540
Q +L G+ I + G +F+G L V E L F
Sbjct: 66 EYACQILNQVKLFGKPIRVNRASQDRGVNTLIGAN---LFVGNLDPLVDERVLYDTFSAL 122
Query: 541 GKVMEVVIMYDQEXKKSRGFGFLSFE 618
G++++ + E +S+G+GF+S++
Sbjct: 123 GQLVKAPQVARDENGRSKGYGFVSYD 148
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 35.9 bits (79), Expect = 0.008
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +1
Query: 202 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 351
+LFVG + + ++E++ +F YG+++DC +M GFGFV D
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVED 46
Score = 33.5 bits (73), Expect = 0.042
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 472 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSFED 621
++F+G +P T D+ FF YG++++ +M GFGF+ ED
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVED 46
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 35.5 bits (78), Expect = 0.010
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +1
Query: 475 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRGF-GFLSFEDEISV 633
VF+G LPS+ E ++ FG++GK+ + I+ KK+ F FL+ D I V
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL----SKKNIAFVHFLNIRDAIKV 350
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 34.3 bits (75), Expect = 0.024
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 11/112 (9%)
Frame = +1
Query: 274 EVIDCVVMKNSESG---RSRGFGFVTFADPSLVNLVLQNGP-HQLDGRTIDPK------- 420
E++ CV ES + F++F DPS Q+ +L R + K
Sbjct: 130 EILSCVRTGPIESAWILPEKNCAFISFLDPSHATAFFQDAALKRLTIRGTEVKVGWGKNS 189
Query: 421 PCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQ 576
N L ++ G VFLG LP+ +TE ++R +G + ++ I+ ++
Sbjct: 190 ASNSSVLLAVQQSGACRNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTER 241
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 34.3 bits (75), Expect = 0.024
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 241 ENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 354
+ L+ FS++G + C + + S+G+GFV+F+ P
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHP 472
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +1
Query: 475 VFLGGLPSNVTET--DLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSF 615
+F+ L N+ L F ++G++ + + S+G+GF+SF
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSF 469
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 33.1 bits (72), Expect = 0.055
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +1
Query: 202 KLFVGGLSWETSQENLQRYFSRYGEVIDC-VVMKNSESGRSRGFGFVTF 345
+++VGGLS +L+ FSR+G V + ++ K++ G + F ++ F
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNF 54
Score = 31.5 bits (68), Expect = 0.17
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = +1
Query: 472 KVFLGGLPSNVTETDLRVFFGRYGKVMEV-VIMYDQEXKKSRGFGFLSFEDEISVXXVTQ 648
++++GGL S++ +DL F R+G V + +I + F +L+F + +
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCK 65
Query: 649 XHFIN--LNGXQVEIXRAXP 702
+ N G ++ I A P
Sbjct: 66 SYLSNATFKGSKLRIEEARP 85
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 31.5 bits (68), Expect = 0.17
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 187 DDEKGKLFVGGLSWETSQENLQRYFSRYGEV 279
+DE ++VG + S E + ++FS+YG+V
Sbjct: 13 EDESSTIYVGNIDSRLSDEEIIKHFSKYGQV 43
Score = 31.5 bits (68), Expect = 0.17
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 232 TSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 345
T + L+ FS +G ++ ++ SG S+G+GFV F
Sbjct: 395 TCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAF 432
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 29.9 bits (64), Expect = 0.51
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 475 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYD 573
+FLGG+ +V E LR F R+G V +++ ++
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHN 440
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 29.9 bits (64), Expect = 0.51
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 247 LQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ 378
L FS YG V+D V +K + + RG V F DPS + ++
Sbjct: 24 LYMLFSTYGTVVDIVALK---TPKMRGQAHVVFFDPSAAAIAMK 64
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 29.1 bits (62), Expect = 0.90
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 205 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 345
++VG LS+ T++E + FS+ GE+ ++ + + GF FV +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEY 80
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 28.3 bits (60), Expect = 1.6
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Frame = +1
Query: 361 VNLVLQNGPHQLDGRTIDPKPCNPRTLQKP-KRGGGYP--KVFLGGLPSNVTETDLRV-F 528
VN+ N P LD + PK R P R G P ++ L GL + E + +
Sbjct: 35 VNISSDN-PRLLD--SYRPKGNYGRDRNSPLSRHIGVPNQEIILQGLTPEILEEHIELAL 91
Query: 529 FGRYGKVMEVVIMYDQEXKKSRGFGFLSF 615
+ KV V ++ ++E +KSR F F F
Sbjct: 92 YATGAKVSTVTLIREKETQKSRCFAFAKF 120
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 12/61 (19%)
Frame = +1
Query: 205 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKN------------SESGRSRGFGFVTFA 348
++V GLS + E L+ F Y + +++ E R RGFGFV+FA
Sbjct: 207 IYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSFA 266
Query: 349 D 351
+
Sbjct: 267 N 267
>SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 171
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 541 GKVMEVVIMYDQEXKKSRGFGFLSFEDEISV 633
GK+ E + + D+E K+ GF FED + V
Sbjct: 101 GKIEEAMKLSDEEFSKTYGFSKPVFEDNVVV 131
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 259 FSRYGEVIDCVVMKNSESGRSRGFGFVTF 345
FS+YG+VIDC ++ S + F F+ F
Sbjct: 386 FSKYGKVIDCKIIHQS---KKPAFAFLRF 411
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 485 AGCHRTLPKPISG-YFSDAMGRSWRWSLCMIKR 580
AG T+PKP++G Y SD RW + KR
Sbjct: 476 AGAQFTVPKPVNGKYRSDMYTIKSRWEIPHCKR 508
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 26.2 bits (55), Expect = 6.3
Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Frame = +1
Query: 172 IRDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNS-ESGRSRGFGFVTFA 348
+ D D+ L L W+ + + R RYG I C+ K GR + F
Sbjct: 157 VADRQDNSLYLLNTSSLVWQKANASGARPSGRYGHTISCLGSKICLFGGRLLDYYFNDLV 216
Query: 349 DPSLVNLVLQNGPHQLDGRTIDPKP 423
L NL + +L DP P
Sbjct: 217 CFDLNNLNTSDSRWELASVVNDPPP 241
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 420 AVQSSHSSKTE--TWRWIP*GVPWRAAIERYRNRS 518
+++ SHSS+ T IP VPWR A +YR S
Sbjct: 145 SLKRSHSSQLAHTTSSEIPGSVPWRRAGIKYRKNS 179
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +1
Query: 475 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSFED 621
+F+ L +T ++ FGRYG V ++ + ++RG F+ +E+
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYEN 59
Score = 25.8 bits (54), Expect = 8.4
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 205 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 345
LF+ LS++ + E + F RYG V ++ + ++RG FV +
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQ---IRLGNTVQTRGTAFVVY 57
>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 133 PWXIKXVVRYAV*IRDMDDDEKGKLFVGGLSWETSQENLQRYFSRY 270
PW VV+ + I+D +DE F+G W ++ +R Y
Sbjct: 97 PWIKMPVVKKFLNIKDESEDETQGQFLGPTDWIQVFQDCKRNLHMY 142
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 8.4
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Frame = +1
Query: 193 EKGKLFVGGLSWETS-QENLQ-----RYFSRYGEVIDCVVMKNSESGRSRG 327
+K +V GLS + + +EN+ YF +YG++I + K + + + G
Sbjct: 114 QKNLAYVNGLSPKVANEENINVLKGPEYFGQYGKIIKIAINKKAAANSANG 164
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,786,203
Number of Sequences: 5004
Number of extensions: 53288
Number of successful extensions: 205
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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