Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_G05
         (915 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5CUF2 Cluster: WD-40 repeat protein, SMART LisH domain...    34   5.8  
UniRef50_A7SGI6 Cluster: Predicted protein; n=4; Nematostella ve...    34   5.8  

>UniRef50_Q5CUF2 Cluster: WD-40 repeat protein, SMART LisH domain;
           n=3; Cryptosporidium|Rep: WD-40 repeat protein, SMART
           LisH domain - Cryptosporidium parvum Iowa II
          Length = 595

 Score = 33.9 bits (74), Expect = 5.8
 Identities = 20/76 (26%), Positives = 41/76 (53%)
 Frame = -3

Query: 583 YMNLTTFILLGKFQSKNALLQILGRITIKKYHSFNII*IVLPIKCLVASGHYNK*IKLAT 404
           + N+    L+ +F  ++ LL+    ++ +   S N I  V  I+ +++ GH+N+ I++  
Sbjct: 6   FSNVNVLKLILQFLLESGLLESYSTLSYESGVSLNWIESVDEIRTIISKGHWNELIEVLK 65

Query: 403 TVISKQDLQIITFIYI 356
            +    +LQII F +I
Sbjct: 66  YIKIPANLQIILFEHI 81


>UniRef50_A7SGI6 Cluster: Predicted protein; n=4; Nematostella
            vectensis|Rep: Predicted protein - Nematostella vectensis
          Length = 4220

 Score = 33.9 bits (74), Expect = 5.8
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2

Query: 293  CNHCPPFGYSCQNCFRV*KSRHH 225
            C  CP F Y C+NCFRV +S  H
Sbjct: 2186 CKTCPDFDY-CENCFRVRRSHRH 2207


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 563,629,261
Number of Sequences: 1657284
Number of extensions: 9218761
Number of successful extensions: 14007
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13999
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 83621356644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)