Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_G04
(880 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 154 1e-38
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 29 0.87
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 29 0.87
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 28 2.0
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces... 27 2.7
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ... 27 4.7
SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces... 27 4.7
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 26 6.1
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 26 6.1
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 154 bits (374), Expect = 1e-38
Identities = 86/224 (38%), Positives = 122/224 (54%), Gaps = 5/224 (2%)
Frame = +3
Query: 198 DDLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREH 377
+DLSEED +L+ +L +LV + +L +L L +IRTST+SMT+VPKPLKFLR H
Sbjct: 44 EDLSEEDLQLKNDLELLVQAVQDATPELVGSSLTQLKEIIRTSTSSMTAVPKPLKFLRPH 103
Query: 378 YPALKQVYEKITDEKTKKFCADVISVLAMGVSGTLEVAEKRECLKYCLLGTLSNVGDWGH 557
Y L ++Y+ K AD++SVL M S T K E LKY L G ++ WGH
Sbjct: 104 YFTLVKIYDSWPQSPQKTQLADILSVLGMSYSNT----SKHESLKYRLQGVTTDPSLWGH 159
Query: 558 EYVRQLEGEIAEEWNIEN-----MDSLLPLVRDVITFDMKHSAEIQACDLLMEIDRLDLL 722
EYVR L EI EE+ D L+ L ++ F + H+AE A DLL E+ ++ +
Sbjct: 160 EYVRHLASEIEEEFASRQEEEAPTDDLMELALTIVPFFLTHNAEADAIDLLQELGAIEKV 219
Query: 723 TQHMDQSNYPRVCLYLIGCASYVVEPESTQXLQGVLXTYLRFGE 854
++ N RVCLY+ C + + PE L+ Y +F +
Sbjct: 220 VPFVELDNASRVCLYITSCVNLLPFPEDVAMLRTAHAIYRKFDQ 263
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 29.1 bits (62), Expect = 0.87
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Frame = +3
Query: 288 PALQMLSNLIRTSTTSMTSVPKPLK---FLREHYPALKQVYEKITDEKTKKFCADVISVL 458
P++ L I + +M + LK ++ E PAL ++ I +EK K F + I +
Sbjct: 1805 PSMSALCRFIIYKSVTMLQNGEVLKSGDYVTEFIPALLDMHVHIPEEKKKSFLSMSIPI- 1863
Query: 459 AMGVSGTLEVAEKRECLKYCLLGTLSNVGDWGHEYVRQL---EGEIAEEWNIENMD 617
A S +E A+ R+ + LL ++ D ++QL + + EE I+N++
Sbjct: 1864 AAHFSILVEHADARKRIGEKLLKIMAIQPDEAKAIIQQLSPRQKKCVEEILIQNVE 1919
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 29.1 bits (62), Expect = 0.87
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +3
Query: 210 EEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFL 368
EE + LQEE+N++ K L + V+ Y L M+ +L + +S++ + +L
Sbjct: 1609 EETEWLQEEVNIMKIKELTSTVNKYREQLAMVQSLNEHAESSLSKAERSKNYL 1661
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +3
Query: 279 LYFPALQM-LSNLIRTSTTSMTSVPKPLKFLREHY-PALKQVYEKITDEKTKKFCADVIS 452
++FPA + ++ +I TS + + FL H P L+ +YE + +EK++ F + S
Sbjct: 204 VFFPAAKATITQMIETSIRFLRT------FLDMHIKPQLQHIYESVVEEKSEAFASATSS 257
Query: 453 VLAMGVSGTL 482
+ +S ++
Sbjct: 258 KILSEMSASM 267
>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 554 SPITYI*QCSQKTILQTLSLFCNFQSTAYAHR 459
SP+TY+ S ++ILQTL T Y +R
Sbjct: 325 SPVTYMISVSARSILQTLLAVAFLGETLYGNR 356
>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 448
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 207 KDHHLEPLRAQLFPSLALQFY 145
+DH L+P R+ LF SL L Y
Sbjct: 222 QDHELKPKRSGLFSSLCLPIY 242
>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 356
Score = 26.6 bits (56), Expect = 4.7
Identities = 21/90 (23%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Frame = +3
Query: 198 DDLSEEDKR-LQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLRE 374
++LSEED + +EL +L D E D + ++ L+ T +T+ + + +R
Sbjct: 247 EELSEEDMDGMFDELQLLPDDKK-REPDHF-----IMKTLVETLVL-LTATREGREHMRR 299
Query: 375 H--YPALKQVYEKITDEKTKKFCADVISVL 458
YP +++++ + DE+ ++ C ++ +L
Sbjct: 300 RKVYPIIRELHLNVDDEEIREVCDQLVQML 329
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 580 PSNCLTYSCPQSPTFDNVPRRQYFKHSLFSATSRVPLTP 464
P+N + +SPT VP +Y +S+ A PL P
Sbjct: 450 PNNYEVSTIMRSPTISTVPPPKYLSNSINGAKFLNPLAP 488
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 26.2 bits (55), Expect = 6.1
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Frame = +3
Query: 372 EHYPAL-KQVYEKITDEKTKKFCADVISVLAMGVSGTLEVAEKRECLKYCLLGTLSNVGD 548
E+Y L +QVY+K T KTKK + S L + + TLE+ L L ++ D
Sbjct: 304 ENYRNLVRQVYDKDTYFKTKKDDLTLSSELLV-IPATLELISSMTSL-------LQSLAD 355
Query: 549 WGHEYVRQLEGEIAEEWNIENMDSLLPLVRD 641
G + + + E + E+ ++ MD + +V +
Sbjct: 356 -GTDELEEQEDSLMEDEDLSYMDDMSNVVNE 385
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,175,922
Number of Sequences: 5004
Number of extensions: 61392
Number of successful extensions: 204
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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