Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_G04
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome re...   216   2e-56
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in...    33   0.27 
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in...    33   0.27 
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in...    33   0.27 
U21317-6|AAA62527.1|  313|Caenorhabditis elegans Hypothetical pr...    32   0.47 

>AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 1 protein.
          Length = 981

 Score =  216 bits (527), Expect = 2e-56
 Identities = 102/227 (44%), Positives = 151/227 (66%), Gaps = 5/227 (2%)
 Frame = +3

Query: 198 DDLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREH 377
           +++SEED++L+E+LN+LV +L   +  LY P+L+ +  LIR STTSMTSVPKPLKF+R H
Sbjct: 31  EEMSEEDQKLEEDLNLLVQRLSEPDTTLYKPSLETMRTLIRASTTSMTSVPKPLKFMRPH 90

Query: 378 YPALKQVYEKITDEKTKKFCADVISVLAMGVSGTLEVAEKRECLKYCLLGTLSNVGDWGH 557
           Y  +K+++  I     KK CAD+ISVLAM         E+ + + Y +LG+   +GDWGH
Sbjct: 91  YNKMKEIFTSIVAPDVKKLCADIISVLAMTSD------ERTDTINYRILGSHEPIGDWGH 144

Query: 558 EYVRQLEGEIAEEWNIENMD-----SLLPLVRDVITFDMKHSAEIQACDLLMEIDRLDLL 722
           EYVR L  E++EEW  E         LL L +D+++  MKH+AE++ACDLL+EI+R+DLL
Sbjct: 145 EYVRHLAMEMSEEWKKEGTSDARKAELLKLTQDIVSHHMKHNAEVEACDLLIEIERIDLL 204

Query: 723 TQHMDQSNYPRVCLYLIGCASYVVEPESTQXLQGVLXTYLRFGEYQE 863
             ++ + ++ RVCLYL+ CA    +P++   ++  L  YL+F  Y E
Sbjct: 205 ISYVQEVDHQRVCLYLLSCAPLTPDPDNIILIRTALQLYLKFNRYLE 251


>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
           interacting proteinprotein 1, isoform d protein.
          Length = 2350

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +3

Query: 198 DDLSEEDKRLQEELNMLVDKL--LGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLR 371
           ++L  E+ RL+ E+N L DK   L NE +     ++     IR S     ++ K L  LR
Sbjct: 672 ENLLRENNRLKSEVNPLKDKYRDLENEYNSTQRRIEEKETQIRYSDDIRRNIQKDLDDLR 731

Query: 372 EHYPALKQVYEKITDE 419
           E Y  +    EKI  E
Sbjct: 732 EKYDRVHTDNEKILGE 747


>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
           interacting proteinprotein 1, isoform b protein.
          Length = 2117

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +3

Query: 198 DDLSEEDKRLQEELNMLVDKL--LGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLR 371
           ++L  E+ RL+ E+N L DK   L NE +     ++     IR S     ++ K L  LR
Sbjct: 745 ENLLRENNRLKSEVNPLKDKYRDLENEYNSTQRRIEEKETQIRYSDDIRRNIQKDLDDLR 804

Query: 372 EHYPALKQVYEKITDE 419
           E Y  +    EKI  E
Sbjct: 805 EKYDRVHTDNEKILGE 820


>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
           interacting proteinprotein 1, isoform a protein.
          Length = 2396

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +3

Query: 198 DDLSEEDKRLQEELNMLVDKL--LGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLR 371
           ++L  E+ RL+ E+N L DK   L NE +     ++     IR S     ++ K L  LR
Sbjct: 745 ENLLRENNRLKSEVNPLKDKYRDLENEYNSTQRRIEEKETQIRYSDDIRRNIQKDLDDLR 804

Query: 372 EHYPALKQVYEKITDE 419
           E Y  +    EKI  E
Sbjct: 805 EKYDRVHTDNEKILGE 820


>U21317-6|AAA62527.1|  313|Caenorhabditis elegans Hypothetical
           protein B0495.8a protein.
          Length = 313

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
 Frame = +3

Query: 375 HYPALKQVYEKITDEKTKKFCADVISVLAMGVS-GTLEVAEKRECLKYCLLGTLSNVGDW 551
           H PA K  YE+   EK   +  D   ++   V    +E+A+ RE L+  +    S   D 
Sbjct: 62  HEPAHKADYERAQKEKDHFYDVDAFEIIEHAVHLVDIEIAKVREKLEDDVKTQTSQAADS 121

Query: 552 GHEYVRQLEGEIAEEWNIENMDSL 623
             + V ++E +IA+  N+++++ L
Sbjct: 122 KAKQVAEIEEKIAK--NVDDIEKL 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,353,878
Number of Sequences: 27780
Number of extensions: 337275
Number of successful extensions: 1084
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)