Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_G03
(889 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 30 0.51
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 29 0.67
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi... 29 0.88
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 28 2.0
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ... 27 2.7
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe... 27 4.7
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 27 4.7
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 26 6.2
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 6.2
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 29.9 bits (64), Expect = 0.51
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = -3
Query: 380 AFHCLTKL*IECYYTYTMQPFRKSIPNILKFLFFS--GHFDAVIMNATSHGRFFGSRVTA 207
+F + +L +CY Y MQ F KFL H I N T HGR +++T+
Sbjct: 718 SFPNIEQLLDDCYANYVMQRFLNVADESQKFLILRSISHVIPKIQN-TRHGRHILAKLTS 776
Query: 206 QTFS 195
T S
Sbjct: 777 STSS 780
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 29.5 bits (63), Expect = 0.67
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +3
Query: 633 FQKSIILLSRLPFI--NLFYKVIQLIAPKHFE-DGESSLEAACHDINRWPSLKAGQNVLL 803
F SI LPF+ + F I IA DG S L + DI+R L+ G V L
Sbjct: 548 FPISIHRSKHLPFVACSSFQDTIITIANDGLSSDGNSRLVYSIEDISRDEMLQTGDGVAL 607
Query: 804 PVLGTV 821
P GT+
Sbjct: 608 PPQGTL 613
>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 29.1 bits (62), Expect = 0.88
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 142 LTQCLMLNNESVRVKFMIENVCAVTRDPKNRPWLVA 249
LT + N +V K +++N+ + DPKN+ W+++
Sbjct: 575 LTPIVRDPNAAVPSKKLLDNLATLAADPKNQVWIIS 610
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +3
Query: 651 LLSRLPFINLFYKVIQLIAPKHFEDGESSLEAACHDIN----RWPSLKAGQNVLLPVLGT 818
LLS + F N + Q+I+ +D ++ + + N +WP+L +N+++P G
Sbjct: 1133 LLSPVDFANNPLLLFQIISKYKIKDTYATFQTLNYIQNQQPTKWPNLSCLENLMIPHDGR 1192
Query: 819 VFQSYIPNQQ 848
+ YI + Q
Sbjct: 1193 ISAFYIASLQ 1202
>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -3
Query: 350 ECYYTYTMQPFRKSIPNILKFLFFSGHFDAVIM 252
+C Y + P RK++ ++ F+ FSG A+++
Sbjct: 95 QCLYYGSKWPLRKALFVVISFMLFSGGLQAMLI 127
>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 248
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 713 FWSYELNNFVEQIDE 669
FWSYELN+FV +E
Sbjct: 121 FWSYELNDFVTNENE 135
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 711 KHFEDGESSLEAACHDINRWPSLKAGQNVLLPVLGTVFQSYIPN 842
+H D SS A + + P L + + LL +LG QS PN
Sbjct: 57 EHHSDRASSYANANNVNSTQPQLVSSEQALLAILGGGLQSITPN 100
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/58 (24%), Positives = 27/58 (46%)
Frame = -3
Query: 311 SIPNILKFLFFSGHFDAVIMNATSHGRFFGSRVTAQTFSIINFTRTLSLFNIKHWVRI 138
S+ N GH ++VI++ + + FFG ++ Q+ + F + +N W I
Sbjct: 845 SLGNTTALSQLKGHINSVIVDDSYNNIFFGGNLSEQSSGCVGF--CIFEYNSSSWRNI 900
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 128 VNEKTKTSTLKSRAASRNSCSAQSIQKVLRNXH 30
VNEKT S +++ SR +QK ++N H
Sbjct: 114 VNEKTIDSKIRNSLYSRTIHHGNRVQKKIKNKH 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,782,165
Number of Sequences: 5004
Number of extensions: 82259
Number of successful extensions: 227
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -