Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_G03
         (889 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    26   0.53 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    24   1.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   8.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   8.6  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = -3

Query: 812 QHWQQYILARLQ*RPSIYIMTGSFQATFTIFEVFWSYELNNFVEQIDER 666
           Q+W+   LA  Q    +  ++G F     + + F++ + N+F+  + ER
Sbjct: 90  QYWKDERLAFSQ-EEEVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTER 137


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +3

Query: 627 GYFQKSII--LLSRLPFINLFYKVIQLIAPKHFEDGESSLEAACHDINRWPSLKAGQNVL 800
           G F K+ +  +L+R    ++ +  +  I P+H  D     EA    I         QN+L
Sbjct: 134 GQFLKAFVAAVLTRQDTQSVIFPPVYEILPQHHLDSRVIQEAQNIAIQNTQGKNNQQNIL 193

Query: 801 LPV 809
           +PV
Sbjct: 194 IPV 196


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 265 SKCPLKKRNFKM 300
           +KCP++ RNF M
Sbjct: 160 AKCPMELRNFPM 171


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 321 WLHCICVVTFDLELGQAMESV 383
           W H   +V F LEL +A+ S+
Sbjct: 864 WGHLSTLVEFALELKKALSSI 884


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,924
Number of Sequences: 438
Number of extensions: 5631
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)