Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_G02
(852 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 59 9e-10
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 40 3e-04
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 38 0.002
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 38 0.002
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 38 0.002
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 36 0.006
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 36 0.007
SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schi... 34 0.029
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 34 0.029
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 34 0.029
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 33 0.039
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 32 0.090
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 31 0.16
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 31 0.16
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 31 0.16
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 31 0.21
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 30 0.36
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 30 0.48
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 30 0.48
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 30 0.48
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 29 0.63
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 28 1.5
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 28 1.5
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 28 1.5
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo... 28 1.5
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 28 1.5
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 28 1.5
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat... 28 1.9
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 28 1.9
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 27 2.6
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 27 3.4
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 27 4.5
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 4.5
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 27 4.5
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 26 5.9
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 26 7.8
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 26 7.8
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 58.8 bits (136), Expect = 9e-10
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 4/134 (2%)
Frame = +2
Query: 356 LNKDATQVVIAGRNVFKVFSIEENDFTE-VC--NLRVGKNLNLNFSSIDVAW-STIEENT 523
+NK T+V +AGR + KV ++ N VC +L + S DV W S+ N
Sbjct: 47 VNKSRTKVGVAGRELLKVLAVNPNSSKPPVCISDLLQKSTQTKHISCNDVKWGSSFASNL 106
Query: 524 LATAATNGAVVVWNLGRSGRSKQEHVFSDHKRTVNKVSFHLTEPALLISGSQDGMMKCFD 703
+ T + G + VW++ + F++H R V+K+ P+ +++ SQDG++K +D
Sbjct: 107 IFTCSPLGNLNVWDVNLEALL---YDFNEHSRAVHKLDISSFHPSYVLTASQDGLIKLWD 163
Query: 704 LRMKEVARTFISNT 745
+ TF N+
Sbjct: 164 YKESSSTITFRGNS 177
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 40.3 bits (90), Expect = 3e-04
Identities = 19/73 (26%), Positives = 39/73 (53%)
Frame = +2
Query: 491 DVAWSTIEENTLATAATNGAVVVWNLGRSGRSKQEHVFSDHKRTVNKVSFHLTEPALLIS 670
D+ WS E+N ++ + +G +W++ ++ V + VN +S++ P LL +
Sbjct: 296 DLQWSPSEKNVFSSCSCDGTFRIWDVRNKQKTSALTVNAHPGVDVNVLSWNTRVPNLLAT 355
Query: 671 GSQDGMMKCFDLR 709
G+ +G+ +DLR
Sbjct: 356 GADNGVWSVWDLR 368
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 37.9 bits (84), Expect = 0.002
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +2
Query: 491 DVAWST-IEENTLATAATNGAVVVWNLGRSGRSKQEHVFSDHKRTVNKVSFHLTEPALLI 667
D W+ + + ++ +VWNL E + H R V +++H P +L
Sbjct: 280 DTQWNVHAARDQWVVSTSSQKTIVWNLALPNDRAIEFMLHGHTRAVTDMNWHRQNPDVLA 339
Query: 668 SGSQDGMMKCFDLR 709
+ S D + C+DLR
Sbjct: 340 TCSIDSSVHCWDLR 353
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 37.9 bits (84), Expect = 0.002
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Frame = +2
Query: 494 VAWSTIEENTLATAATNGAVVVWNLGRSGRSKQEHVF----SDHKRTVNKVSFHLTEPAL 661
V W+ + + TL + + + + W+L S V S H++ V+ V FH L
Sbjct: 190 VCWNFLSKGTLVSGSQDATLSCWDLNAYNESDSASVLKVHISSHEKQVSDVRFHYKHQDL 249
Query: 662 LISGSQDGMMKCFDLRMKEVA 724
L S S D + D+R + +
Sbjct: 250 LASVSYDQYLHVHDIRRPDAS 270
Score = 35.5 bits (78), Expect = 0.010
Identities = 21/71 (29%), Positives = 36/71 (50%)
Frame = +2
Query: 494 VAWSTIEENTLATAATNGAVVVWNLGRSGRSKQEHVFSDHKRTVNKVSFHLTEPALLISG 673
VA++ + LAT +T+ + +W+L +++ H H+ V K+SF E +L S
Sbjct: 287 VAFNPHNDFILATCSTDKTIALWDL--RNLNQRLHTLEGHEDIVTKISFSPHEEPILAST 344
Query: 674 SQDGMMKCFDL 706
S D +DL
Sbjct: 345 SADRRTLVWDL 355
Score = 30.3 bits (65), Expect = 0.36
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 587 KQEHVFSDHKRTVNKVSFHLTEPALLISGSQDGMMKCFDL 706
K ++ + H + V ++ L+SGSQD + C+DL
Sbjct: 175 KPKYRLTKHTQPCTSVCWNFLSKGTLVSGSQDATLSCWDL 214
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 37.5 bits (83), Expect = 0.002
Identities = 24/69 (34%), Positives = 35/69 (50%)
Frame = +2
Query: 494 VAWSTIEENTLATAATNGAVVVWNLGRSGRSKQEHVFSDHKRTVNKVSFHLTEPALLISG 673
+AWS N LAT + + +V +W V +H + V V++H TE LL+SG
Sbjct: 384 IAWSC-NGNYLATCSRDKSVWIWEATEDDEFDCLAVLQEHTQDVKVVTWHPTED-LLVSG 441
Query: 674 SQDGMMKCF 700
S D + CF
Sbjct: 442 SYDNSI-CF 449
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 36.3 bits (80), Expect = 0.006
Identities = 20/72 (27%), Positives = 37/72 (51%)
Frame = +2
Query: 518 NTLATAATNGAVVVWNLGRSGRSKQEHVFSDHKRTVNKVSFHLTEPALLISGSQDGMMKC 697
N L + + + + +W+L K F+ H V+ + ++ P++L+SGS D K
Sbjct: 268 NLLVSGSADTTLKLWDLSTCNCVKS---FTYHSDKVSCLDWYSKAPSVLLSGSYDKTAKI 324
Query: 698 FDLRMKEVARTF 733
DLR++E +F
Sbjct: 325 ADLRLEEAPSSF 336
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 35.9 bits (79), Expect = 0.007
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = +2
Query: 518 NTLATAATNGAVVVWNLGRSGRSKQEHVFSDHKRTVNKVSFHLTEPALLISGSQDGMMKC 697
N + ++G + V++ R V+ +H + V + LIS S DG +K
Sbjct: 1146 NIIVAGFSDGVLRVYDKRLPARDSLTDVWKEHSSEIVNVEMQSSGMRELISASSDGEVKL 1205
Query: 698 FDLRMKEVARTF 733
+D+RM +TF
Sbjct: 1206 WDIRMNHSLQTF 1217
>SPAC23H3.08c |bub3||mitotic spindle checkpoint protein
Bub3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 320
Score = 33.9 bits (74), Expect = 0.029
Identities = 21/84 (25%), Positives = 44/84 (52%)
Frame = +2
Query: 419 EENDFTEVCNLRVGKNLNLNFSSIDVAWSTIEENTLATAATNGAVVVWNLGRSGRSKQEH 598
+ +FT C+ ++ K+ ++ + D+ + I + TLATA +G V W++ K+
Sbjct: 214 QSKNFTFKCHRQIQKDYDIVYPVNDLKFHPIHQ-TLATAGGDGVVAFWDI---QVRKRLR 269
Query: 599 VFSDHKRTVNKVSFHLTEPALLIS 670
V + K ++ +SF++ L I+
Sbjct: 270 VLNPSKINISSISFNVDGSMLAIA 293
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 33.9 bits (74), Expect = 0.029
Identities = 20/74 (27%), Positives = 36/74 (48%)
Frame = +2
Query: 533 AATNGAVVVWNLGRSGRSKQEHVFSDHKRTVNKVSFHLTEPALLISGSQDGMMKCFDLRM 712
AA N V ++++ S + F H V ++FH + L + S+DG +K +D+R
Sbjct: 57 AAGNPHVRLYDINTSSQMPLM-TFEGHTNNVTAIAFHC-DGKWLATSSEDGTVKVWDMRA 114
Query: 713 KEVARTFISNTXIN 754
V R + + +N
Sbjct: 115 PSVQRNYDHKSPVN 128
Score = 32.7 bits (71), Expect = 0.068
Identities = 21/61 (34%), Positives = 35/61 (57%)
Frame = +2
Query: 524 LATAATNGAVVVWNLGRSGRSKQEHVFSDHKRTVNKVSFHLTEPALLISGSQDGMMKCFD 703
LAT++ +G V VW++ R+ ++ + DHK VN + H + LL S Q G ++ +D
Sbjct: 98 LATSSEDGTVKVWDM-RAPSVQRNY---DHKSPVNDLLIHPNQGELL-SCDQSGRVRAWD 152
Query: 704 L 706
L
Sbjct: 153 L 153
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 33.9 bits (74), Expect = 0.029
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +2
Query: 518 NTLATAATNGAVVVWNLGRSGRSKQE-HVFSDHKRTVNKVSFHLTEPALLISGSQDGMMK 694
+ L TA + VW++ R++Q HV S HK TV ++ +P +++GS D ++
Sbjct: 260 DVLVTAGRDAVARVWDM----RTRQNVHVLSGHKSTVASLAVQEFDPQ-VVTGSMDSTIR 314
Query: 695 CFDL 706
+DL
Sbjct: 315 LWDL 318
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 33.5 bits (73), Expect = 0.039
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Frame = +2
Query: 494 VAWSTIEENTLATAATNGAVVVWNLG-RSGRSKQEHVFSD----HKRT--VNKVSFHLTE 652
+ W+ LAT A + + +W++ +S S + V S H+ T VN V FH
Sbjct: 188 LCWNPNLPGNLATGAEDQVICLWDVQTQSFTSSETKVISPIAKYHRHTDIVNDVQFHPQH 247
Query: 653 PALLISGSQDGMMKCFDLRM 712
ALL S S D ++ D R+
Sbjct: 248 EALLASVSDDCTLQIHDTRL 267
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 500 WSTIEENTLATAATNGAVVVWNLGRSGRSK 589
WS +E LA+++T+ V +W+L + G +
Sbjct: 333 WSPHDEPILASSSTDRRVCIWDLEKIGEEQ 362
Score = 26.2 bits (55), Expect = 5.9
Identities = 18/71 (25%), Positives = 33/71 (46%)
Frame = +2
Query: 494 VAWSTIEENTLATAATNGAVVVWNLGRSGRSKQEHVFSDHKRTVNKVSFHLTEPALLISG 673
VA + + LATA+ + V +W+L ++ H H+ V + + + +L S
Sbjct: 287 VAINPFNDYLLATASADKTVALWDL--RNPYQRLHTLEGHEDEVYGLEWSPHDEPILASS 344
Query: 674 SQDGMMKCFDL 706
S D + +DL
Sbjct: 345 STDRRVCIWDL 355
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 32.3 bits (70), Expect = 0.090
Identities = 20/66 (30%), Positives = 39/66 (59%)
Frame = +2
Query: 524 LATAATNGAVVVWNLGRSGRSKQEHVFSDHKRTVNKVSFHLTEPALLISGSQDGMMKCFD 703
+ATA+ + +V +W+ G++G+ H V + ++ T+ LL+S SQD +K +D
Sbjct: 404 IATASFDSSVRLWD-GKTGKFLA--TLRGHVAAVYQCAWS-TDSRLLVSSSQDTTLKVWD 459
Query: 704 LRMKEV 721
+R K++
Sbjct: 460 VRSKKM 465
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 31.5 bits (68), Expect = 0.16
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Frame = +2
Query: 392 RNVFK-VFSIEENDFTEVCNLRVGKNLNLNFSSIDVAWSTIEENTLATAATNGAVVVWNL 568
RN+ K VF+ E D ++ L+V L L +S+ +W + +A VWN
Sbjct: 305 RNLNKSVFNTSE-DLSDN-RLKVPSRLTLGGTSLSWSW---RHSGRIVSACQEYCYVWNF 359
Query: 569 GRSGRSKQEHVFSDHKRTVNKVSFHLTEPALLISGSQD 682
++ + E V + HK TVN+V F E + S + D
Sbjct: 360 NKA--NPLEFVHAGHKGTVNEVDFDPFEAQCIASVADD 395
Score = 27.1 bits (57), Expect = 3.4
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Frame = +2
Query: 494 VAWSTIEENTLATAATNGAVVVWNLGRSGRSKQ----EHVFSDHKRTVNKVSFHLTEPAL 661
++W+ + L TAA + ++ W+L R + F VN V +H L
Sbjct: 188 LSWNRQQNCRLVTAANDSKILEWDLNNFSRDTRCLTPVKDFHYDDSPVNDVEYHPHHTNL 247
Query: 662 LISGSQDGMMKCFDLRMKE 718
I+ + +G+ D R+++
Sbjct: 248 YIAVNDNGIAFICDNRLQQ 266
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 31.5 bits (68), Expect = 0.16
Identities = 26/109 (23%), Positives = 47/109 (43%)
Frame = +2
Query: 395 NVFKVFSIEENDFTEVCNLRVGKNLNLNFSSIDVAWSTIEENTLATAATNGAVVVWNLGR 574
N++ + + N+ + +C + + N I+V T + L T ++ G +WN G
Sbjct: 53 NLYPPYEYKYNNTSSLCTKYIHTSANKARHVINVVRWTPDGRRLLTGSSTGEFTLWN-GL 111
Query: 575 SGRSKQEHVFSDHKRTVNKVSFHLTEPALLISGSQDGMMKCFDLRMKEV 721
+ E + H V + T+ LISG GM+K F+ + V
Sbjct: 112 TFNF--ELINQSHDYAVRCAEWS-TDGRWLISGDGGGMVKYFEPNLNNV 157
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 31.5 bits (68), Expect = 0.16
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 524 LATAATNGAVVVWNLGRSGRSKQEHVFSDHKRTVNKVSFHLTEPALLISGSQDGMMKCFD 703
LA+ NG+VV+W+L S+ V + H R + V + + L++ S+D +D
Sbjct: 39 LASGLVNGSVVIWDLSTFSVSR---VLTGHTRAIQSVCWSSCD-RFLLTASRDWKCILWD 94
Query: 704 LR 709
LR
Sbjct: 95 LR 96
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 31.1 bits (67), Expect = 0.21
Identities = 21/73 (28%), Positives = 42/73 (57%)
Frame = +2
Query: 521 TLATAATNGAVVVWNLGRSGRSKQEHVFSDHKRTVNKVSFHLTEPALLISGSQDGMMKCF 700
T + +++ AV++ L R G S+ FS K +V V+FH T P LL++ + ++ +
Sbjct: 541 TSSPTSSSQAVLIHQLSR-GASQSP--FSKSKGSVQAVTFHPTMPYLLVATQR--YVRIY 595
Query: 701 DLRMKEVARTFIS 739
+L +E+ +T ++
Sbjct: 596 NLVKQELVKTLLT 608
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 30.3 bits (65), Expect = 0.36
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 602 FSDHKRTVNKVSFHLTEPALLISGSQDGMMKCFDLR 709
F + +N +SF + A ++G++DG+ +CFD+R
Sbjct: 186 FPGNTSDINSISFFPSN-ADFVTGAEDGIARCFDIR 220
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 29.9 bits (64), Expect = 0.48
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +2
Query: 497 AWSTIEENTL-ATAATNGAVVVWNLGRSGRSKQEHVFSDHKRTVNKVSFHLTEPALLISG 673
AWS I + L ATA + ++ + ++ +SG H S H V V + +L SG
Sbjct: 152 AWSPIASHCLIATAYRSSSIRLCDM-QSG--SYTHSLSGHTGNVLAVDWCPKNEFVLASG 208
Query: 674 SQDGMMKCFDLR 709
S DG + +D+R
Sbjct: 209 SADGTCRLWDIR 220
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 29.9 bits (64), Expect = 0.48
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +2
Query: 497 AWSTIEENTLATAATNGAVVVWNLGRSGRSKQEHVFSDH--KRTVNKVSFHLTEPALLIS 670
AW+ + + ATA +G++ W G + + H ++ ++ +SF + L+S
Sbjct: 257 AWNPAKPDNFATAVLDGSIQFWQKGSRTKRPVMKIKDAHLPQQGISCLSFS-QDGNYLLS 315
Query: 671 GSQDGMMKCFDLR 709
+D ++ +DLR
Sbjct: 316 RGEDNALRVWDLR 328
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 29.9 bits (64), Expect = 0.48
Identities = 17/74 (22%), Positives = 39/74 (52%)
Frame = +2
Query: 524 LATAATNGAVVVWNLGRSGRSKQEHVFSDHKRTVNKVSFHLTEPALLISGSQDGMMKCFD 703
L TA+++ V +W+ G +G + HVFS VN + ++L E +++ + + ++ ++
Sbjct: 403 LLTASSDTTVKLWSRGDAGAFECLHVFS-FSSPVNCIDWNLREGTPILAVASNSIVSMYN 461
Query: 704 LRMKEVARTFISNT 745
+ F+ +T
Sbjct: 462 AISLQQLAVFMRHT 475
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 29.5 bits (63), Expect = 0.63
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +2
Query: 524 LATAATNGAVVVWNLGRSGRSKQEHVFSDHKRTVNKVSFHLTEPALLISGSQDGMMKCFD 703
+ T+ NG + +W+ R G F H V ++FH T+P L +SG D + ++
Sbjct: 26 ILTSLHNGRIQLWDY-RMGTLLDR--FDGHDGPVRGIAFHPTQP-LFVSGGDDYKVNVWN 81
Query: 704 LRMKEV 721
+ +++
Sbjct: 82 YKSRKL 87
Score = 25.8 bits (54), Expect = 7.8
Identities = 16/70 (22%), Positives = 33/70 (47%)
Frame = +2
Query: 524 LATAATNGAVVVWNLGRSGRSKQEHVFSDHKRTVNKVSFHLTEPALLISGSQDGMMKCFD 703
+ +A + V +W + S ++ + H V+ FH L++S S+D ++ +D
Sbjct: 227 ILSAGDDRLVKLWRMTAS-KAWEVDTCRGHFNNVSCCLFH-PHQELILSASEDKTIRVWD 284
Query: 704 LRMKEVARTF 733
L + +TF
Sbjct: 285 LNRRTAVQTF 294
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/79 (22%), Positives = 38/79 (48%)
Frame = +2
Query: 488 IDVAWSTIEENTLATAATNGAVVVWNLGRSGRSKQEHVFSDHKRTVNKVSFHLTEPALLI 667
+D++WS N L +++ + +W+ R K +H V ++FH + +
Sbjct: 313 LDLSWS--RNNFLLSSSMDKTARLWHPVR----KDCLCCFEHSDFVTSIAFHPKDDRFFL 366
Query: 668 SGSQDGMMKCFDLRMKEVA 724
SGS D ++ + ++ K V+
Sbjct: 367 SGSLDCKLRLWSIKEKAVS 385
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +2
Query: 524 LATAATNGAVVVWNLGRSGRSKQEHVFSDHKRTVNKVSFHLTEPALLISGSQDGMMK 694
L TA + + VW+ + + H V+ FH P ++ISGS+DG +K
Sbjct: 201 LITAGDDNLIKVWDYQTKACVR---ILEGHTNNVSFAFFHSKFP-IIISGSEDGTVK 253
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +2
Query: 656 ALLISGSQDGMMKCFDLRMKEVARTFISNT 745
A + SG+ DG+++ +DLR+ R+FI +T
Sbjct: 507 AAVASGTVDGLIRIWDLRIGLPVRSFIGHT 536
>SPCC63.06 |||human WDR89 family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 331
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +2
Query: 548 AVVVWNLGRSGRSKQEHVFSDHKRTVNKVSFHLTEPALLISGSQDGMMKCFDLRMKE 718
+V +W++ RS + H + + FH + LL++GS DG++ D +E
Sbjct: 125 SVQLWDV-RSEQKLIRQWNDAHNDDITHLQFHPKDNELLLTGSVDGLVSLLDTTKEE 180
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 28.3 bits (60), Expect = 1.5
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +2
Query: 497 AWSTIEEN-TLATAATNGAVVVWNLGRSGRSKQEHVFSDHKRTVNKVSFHLTEPALLISG 673
AW E TLAT A + V +W ++ +S H V +V+FH L+S
Sbjct: 228 AWDADSEQLTLATGAADNTVCLW---KASQSTPLLRLEGHLARVGRVAFH-PSGDYLVSA 283
Query: 674 SQDGMMKCFDL 706
S D + +D+
Sbjct: 284 SFDTTWRLWDV 294
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 28.3 bits (60), Expect = 1.5
Identities = 21/102 (20%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Frame = +2
Query: 410 FSIEENDFTEVCNLRVGKNLNLNFSSIDVAW-STIEENTLATAATNGAVVVWNLGRSGRS 586
+S+ ++ + +L G+N++ + + + + L ++ +V + R+G
Sbjct: 285 YSVGQDHTIKTWDLITGQNVDSKITKAPLLCVEKLTDLHLVICGSSARHIVVHDPRAGSD 344
Query: 587 K-QEHVFSDHKRTVNKVSFHLTEPALLISGSQDGMMKCFDLR 709
K H S HK V+ +S P + S S D + +D+R
Sbjct: 345 KIVSHTLSGHKNLVSGLSASPENPYMFASVSHDNTCRVWDVR 386
>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
phosphatidyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 458 GKNLNLNFSSIDVAWSTIEENTLATAATNGAVVVW 562
GK+ +L+FS I++ WST ++ + TN + W
Sbjct: 418 GKHYSLSFSIINIFWSTALKSYIFEKFTNTILGFW 452
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 500 WST-IEENTLATAATNGAVVVWNLGRSGRSKQEHVFSDH 613
W+ I ENTL + + + V VWN+ ++K H+F H
Sbjct: 395 WAVKIHENTLVSGSIDKTVRVWNI---EKAKCTHIFRGH 430
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 27.5 bits (58), Expect = 2.6
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 491 DVAWSTIEENTLATAATNGAVVVWNLGRSGR--SKQEHVFSDHKRTVNKVSF 640
DVA T ++ +TAATN VV N R+ + K+ H K+ NK F
Sbjct: 467 DVATPTADDQDPSTAATNEESVVSNEDRTSKKAGKKHHRHHKKKKGGNKRVF 518
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 27.1 bits (57), Expect = 3.4
Identities = 18/72 (25%), Positives = 39/72 (54%)
Frame = +2
Query: 494 VAWSTIEENTLATAATNGAVVVWNLGRSGRSKQEHVFSDHKRTVNKVSFHLTEPALLISG 673
V ++ E + LA+A + ++V+++L S S + + K N +S++ E ++G
Sbjct: 193 VKFNYTETSVLASAGMDRSIVIYDLRTS--SPLTKLIT--KLRTNSISWNPMEAFNFVAG 248
Query: 674 SQDGMMKCFDLR 709
S+D + +D+R
Sbjct: 249 SEDHNLYMYDMR 260
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 26.6 bits (56), Expect = 4.5
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +2
Query: 476 NFSSIDVAWSTIEENTLATAATNGAVVVWNLGRSGRSKQEHVFSDHKRTVNKVSFHLTEP 655
N + ++WS + + L T++ + V +W+ +K VF H V V+FH +
Sbjct: 255 NAEVLSISWS--KNDFLLTSSADRTVRLWH---PKSTKSLAVFR-HNEIVTCVAFHPIDD 308
Query: 656 ALLISGSQD 682
+SGS D
Sbjct: 309 RYFVSGSLD 317
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 259 LLMCIIFVYITLFVFIFKFTLI*CLDYDTYFPIYHKYTY 143
LL IF + FVF+F TL+ P +H +T+
Sbjct: 31 LLYSFIFATLHAFVFLFSHTLVSSQFRRLKLPYHHHHTF 69
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 26.6 bits (56), Expect = 4.5
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +2
Query: 512 EENTLATAATNGAVVVWNLGRSG---RSKQEHVFSDHKRTVNKVSFHLTEPALLISGSQD 682
+++ LAT++ + V++L R + V H +V +V+F P L+S S+D
Sbjct: 191 DDSLLATSSGDQTSKVFDLSTQQCITRLGRRGVDGYHSHSVKQVNFCNDSPYNLVSCSRD 250
Query: 683 GMMKCFDLR 709
G + +D+R
Sbjct: 251 GSIIFWDMR 259
>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
Raf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 638
Score = 26.2 bits (55), Expect = 5.9
Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Frame = +2
Query: 467 LNLNFSSIDVAWSTIEENTL--ATAATNGAVVVWN---------LGRSGRSKQEHVFSDH 613
LN + D+ +TI + + ++ T+ VW+ L + G++K H +
Sbjct: 482 LNFTTTQKDINHATISNSGILVTSSGTDNQTFVWDSRKPDKPLSLLKHGKTKMIHFDGAN 541
Query: 614 KRTVNK-VSFHLTEPA--LLISGSQDGMMKCFDLRM 712
+ V+ ++ +P L ++G DG++K +DLR+
Sbjct: 542 EEEVDAGINMAQWQPKGNLFVTGGSDGIVKVWDLRL 577
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 614 KRTVNKVSFHLTEPALLISGSQDGMMKCFDLRMKEV 721
K +NK+ + P L S ++GM++ FD++ +E+
Sbjct: 485 KDRINKIVWKNGNPDRLYSLHENGMVRVFDVKSEEL 520
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 235 YITLFVFIFKFTLI*CLDYDTYFPIY 158
Y TLF+ +F T+ YDT P++
Sbjct: 536 YATLFIVVFGLTIFTVRYYDTQCPVW 561
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,037,716
Number of Sequences: 5004
Number of extensions: 57811
Number of successful extensions: 204
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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