Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_G01
         (904 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    28   0.10 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.9  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   3.8  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   6.7  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 28.3 bits (60), Expect = 0.10
 Identities = 10/18 (55%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
 Frame = +3

Query: 132 YWKTGXYDIV-VPTYINS 182
           YWK+G +DI+ VP Y+N+
Sbjct: 195 YWKSGTWDIINVPAYLNT 212


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 10/36 (27%), Positives = 12/36 (33%)
 Frame = +3

Query: 48  FXVYHVXXXXGCXCIMPA*CGVICLRCKYWKTGXYD 155
           F + H      C C M    G  C   + W T   D
Sbjct: 744 FALCHCCDFDACDCEMTCPAGCKCYNDRTWNTNAVD 779


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 671 HYYIVTFCGSIICRLKRELGTREW 742
           H Y+    G II R KRE   + W
Sbjct: 128 HLYMGLLSGGIILRKKREFMQKIW 151


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 570 VVSSEIDYNLSCILLL-LIARILFQNKKL*KQIKLV 466
           VVSS I + + CI++L +  R+    +K  K I+ V
Sbjct: 194 VVSSSISFYVPCIVMLGIYCRLYCYAQKHVKSIRAV 229


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,844
Number of Sequences: 438
Number of extensions: 3925
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)