Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_F24
         (966 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938     31   1.4  
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082...    31   1.4  
12_02_1036 - 25587313-25587890,25589209-25589272,25589356-255894...    31   1.8  
03_03_0100 + 14411807-14412100                                         30   3.2  
03_04_0168 + 17953848-17954585                                         29   5.5  
10_08_0331 - 16831646-16834756                                         29   7.3  
10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593     29   7.3  

>05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938
          Length = 331

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -1

Query: 390 FFFFFXGXXXXFFFFFXXXFFF 325
           FFFFF      FFFFF   FFF
Sbjct: 62  FFFFFFFFFFFFFFFFFFFFFF 83



 Score = 31.1 bits (67), Expect = 1.4
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -1

Query: 390 FFFFFXGXXXXFFFFFXXXFFF 325
           FFFFF      FFFFF   FFF
Sbjct: 63  FFFFFFFFFFFFFFFFFFFFFF 84



 Score = 31.1 bits (67), Expect = 1.4
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -1

Query: 390 FFFFFXGXXXXFFFFFXXXFFF 325
           FFFFF      FFFFF   FFF
Sbjct: 64  FFFFFFFFFFFFFFFFFFFFFF 85



 Score = 31.1 bits (67), Expect = 1.4
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -1

Query: 390 FFFFFXGXXXXFFFFFXXXFFF 325
           FFFFF      FFFFF   FFF
Sbjct: 65  FFFFFFFFFFFFFFFFFFFFFF 86


>05_03_0496 +
           14706959-14707020,14707173-14707538,14708070-14708209,
           14708319-14708566,14708814-14708946,14709096-14709159,
           14709284-14709380,14709505-14709607,14709702-14709838,
           14710063-14710152,14710240-14710401
          Length = 533

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -1

Query: 390 FFFFFXGXXXXFFFFFXXXFFF 325
           FFFFF      FFFFF   FFF
Sbjct: 87  FFFFFFFFFFFFFFFFFFFFFF 108


>12_02_1036 -
           25587313-25587890,25589209-25589272,25589356-25589448,
           25589533-25589683,25590474-25590539,25590594-25590907
          Length = 421

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +1

Query: 91  RVQREPPQHVAGVAWARMRRPA--ASSDVARPLDWPRY*RDSPRRLATRQTRISI 249
           ++ R P + V G AW  +RRP+   +SDV      P++ RD+ ++L     R SI
Sbjct: 314 QLTRRPTEEVRGEAWHYLRRPSEDGTSDVMEGHADPKFQRDN-KQLENHVDRYSI 367


>03_03_0100 + 14411807-14412100
          Length = 97

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = +2

Query: 32  GIPLSFWHSGSAAGTVPGXPACNANRPNMWLGSRGPGCDGRR 157
           G+PL  W  G AAG V       A+      G R PG  G R
Sbjct: 2   GLPLEQWCGGEAAGVVAAGKESAASSAAAAAGCRTPGGGGAR 43


>03_04_0168 + 17953848-17954585
          Length = 245

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 52  ALGQRSGNCARXTRVQREPP--QHVAGVAWARMRRPA 156
           A  Q+  + AR TR     P    V+  +W RMRRPA
Sbjct: 121 AAQQQGASAARATRAPPPAPAASRVSSFSWGRMRRPA 157


>10_08_0331 - 16831646-16834756
          Length = 1036

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 99  TRTAPTCGWGRVGPDATAGG 158
           TR +P C W  VG DA  GG
Sbjct: 53  TRASPVCTWRGVGCDAAGGG 72


>10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593
          Length = 1278

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 99  TRTAPTCGWGRVGPDATAGGVQ 164
           +R AP C W  V  DA AGG +
Sbjct: 47  SRAAPVCAWRGVACDAAAGGAR 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,195,201
Number of Sequences: 37544
Number of extensions: 301331
Number of successful extensions: 1226
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2799822860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)