Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_F23
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    48   2e-06
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo...    48   2e-06
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    42   1e-04

>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 23/43 (53%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
 Frame = +2

Query: 377 EQLKPEYLKLNPQHTVPTLVD---DGLSIWESRAIITYLVNKY 496
           EQ  PE+L LNP   VPTL+D   +  +IWES AI+ YL +KY
Sbjct: 40  EQKSPEHLALNPNGRVPTLIDHHNNDYTIWESDAILIYLADKY 82


>SPCC965.07c |gst2||glutathione S-transferase
           Gst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
 Frame = +2

Query: 374 GEQLKPEYLKLNPQHTVPTLVD---DGLSIWESRAIITYLVNKYAXGS--SLYPEDPKAR 538
           GEQ   E+L LNP   VPTLVD   +  +IWES AI+ YL +KY      SL  +DP+  
Sbjct: 39  GEQKCKEHLALNPNGRVPTLVDHKNNDYTIWESDAILIYLADKYDTDRKISLSFDDPEYY 98

Query: 539 ALVDH 553
            L+ +
Sbjct: 99  KLIQY 103


>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 23/57 (40%), Positives = 31/57 (54%)
 Frame = +2

Query: 389 PEYLKLNPQHTVPTLVDDGLSIWESRAIITYLVNKYAXGSSLYPEDPKARALVDHRL 559
           P Y KL+P    P +VDDG++  ES AI+ +LV KY  G S  P +     L  + L
Sbjct: 40  PAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKY--GPSFKPSEEDVAELEKYEL 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,902,950
Number of Sequences: 5004
Number of extensions: 32773
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)