Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_F22
         (1022 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom...    91   3e-19
SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|...    69   1e-12
SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|...    69   1e-12
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    29   1.1  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    28   2.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.3  

>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 171

 Score = 90.6 bits (215), Expect = 3e-19
 Identities = 44/58 (75%), Positives = 51/58 (87%)
 Frame = -1

Query: 407 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDXKVKRIT 234
           LQFPVGR+ R LK +T ++ RVGA +AVYSAA+LEYLTAEVLELAGNA+KD KVKRIT
Sbjct: 64  LQFPVGRVRRFLKAKTQNNMRVGAKSAVYSAAVLEYLTAEVLELAGNAAKDLKVKRIT 121


>SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 132

 Score = 68.5 bits (160), Expect = 1e-12
 Identities = 35/57 (61%), Positives = 42/57 (73%)
 Frame = -1

Query: 407 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDXKVKRI 237
           L FPVGR+HR L+    +  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI
Sbjct: 25  LAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRI 80


>SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 68.5 bits (160), Expect = 1e-12
 Identities = 35/57 (61%), Positives = 42/57 (73%)
 Frame = -1

Query: 407 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDXKVKRI 237
           L FPVGR+HR L+    +  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI
Sbjct: 25  LAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRI 80


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 315 RYFGISYSRGFGVGGKCV*RFXSEAYYSIGT 223
           +Y G +YS G  V GKCV +F +  +  +GT
Sbjct: 311 QYLGTNYSNGTAVDGKCVTQFDNVGFL-VGT 340


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +1

Query: 604  PFRXSXPLPXLGPTVRPXXPPXQGSKIGGXPPLXXXPSLRXXTAPXXP 747
            P + + P   + P V+P  PP  GS   G P     P+L     P  P
Sbjct: 1003 PNKPTKPDHLVAPRVKPLLPPRSGSSSSGVP----APNLTPVNVPPTP 1046


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 18/63 (28%), Positives = 21/63 (33%)
 Frame = +1

Query: 616 SXPLPXLGPTVRPXXPPXQGSKIGGXPPLXXXPSLRXXTAPXXPXKKLXNXXLXGXPLTG 795
           S PLP  G +  P  PP      G  PP     S R  + P  P   +        P  G
Sbjct: 350 SIPLPPQGRSAPPPPPPRSAPSTGRQPP--PLSSSRAVSNPPAPPPAIPGRSAPALPPLG 407

Query: 796 XHS 804
             S
Sbjct: 408 NAS 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,501,775
Number of Sequences: 5004
Number of extensions: 36142
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 533248662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)