Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_F21
         (883 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    26   0.40 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   2.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   3.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.7  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   8.6  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   8.6  

>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 65  YDRYNKINNK*GNYHSKNFYLLMFL 139
           Y  YN  NN   NY+ K +Y + ++
Sbjct: 91  YSNYNNYNNNYNNYNKKLYYNINYI 115


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 65  YDRYNKINNK*GNYHSKNFYLLMFL 139
           Y+ YN  NN   N + K +Y + ++
Sbjct: 334 YNNYNNYNNNYNNNYKKLYYNINYI 358



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 65  YDRYNKINNK*GNYHSKN 118
           Y  YN  NN   NY++ N
Sbjct: 324 YSNYNNYNNNYNNYNNYN 341


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 474 QAAITYGSLTDTHTISATPSDFSLSAF 394
           Q AITY    D  T+  +PS  SL+A+
Sbjct: 211 QTAITYVWKNDEGTLRKSPSLTSLNAY 237


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 474 QAAITYGSLTDTHTISATPSDFSLSAF 394
           Q AITY    D  T+  +PS  SL+A+
Sbjct: 211 QTAITYVWKNDEGTLRKSPSLTSLNAY 237


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 474 QAAITYGSLTDTHTISATPSDFSLSAF 394
           Q AITY    D  T+  +PS  SL+A+
Sbjct: 262 QTAITYVWKNDEGTLRKSPSLTSLNAY 288


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 474 QAAITYGSLTDTHTISATPSDFSLSAF 394
           Q AITY    D  T+  +PS  SL+A+
Sbjct: 211 QTAITYVWKNDEGTLRKSPSLTSLNAY 237


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = -2

Query: 411 FSLSAFCTYPGKCVLEHPGVKAPGTANNTTFFP 313
           +  S   T+ G C+   PG+       + T+FP
Sbjct: 87  YQTSVVVTHDGSCLYVPPGIFKSTCKIDITWFP 119


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 65  YDRYNKINNK*GNYHSKNFY 124
           Y+ YN  NN   N ++K  Y
Sbjct: 327 YNNYNNYNNNNYNNYNKKLY 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,203
Number of Sequences: 438
Number of extensions: 4790
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)