Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_F16
         (902 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     31   0.009
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    24   1.4  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    24   1.4  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    24   1.4  
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    22   5.7  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    22   5.7  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   5.7  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    22   7.6  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 31.5 bits (68), Expect = 0.009
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 740 PGKSPSRAPPGTXXDSNHVERQKWSXQRQDS 648
           PG+ P RAP G    ++H+++Q+   QR D+
Sbjct: 38  PGRPPKRAPVGLSLAASHLQQQQLKKQRLDN 68


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 302 HDRCTIV*YNRLSIVIYNQLVHTTGTQGGSDRIDNKL 192
           HD CT+  Y   S V   +LV       GSD + +K+
Sbjct: 149 HDSCTVNNYQDASNVRNCELVGLADLNQGSDYVRSKI 185


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 302 HDRCTIV*YNRLSIVIYNQLVHTTGTQGGSDRIDNKL 192
           HD CT+  Y   S V   +LV       GSD + +K+
Sbjct: 150 HDSCTVNNYQDASNVRNCELVGLADLNQGSDYVRSKI 186


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 302 HDRCTIV*YNRLSIVIYNQLVHTTGTQGGSDRIDNKL 192
           HD CT+  Y   S V   +LV       GSD + +K+
Sbjct: 150 HDSCTVNNYQDASNVRNCELVGLADLNQGSDYVRSKI 186


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 553 SSGDLLSIFT-ACSLIFSMASLDAVLTALIRTRG*TPSSTN 434
           + G  LSI   +  ++FS  +   VL  +++ R  TPS  N
Sbjct: 49  NEGHQLSIIVYSILMVFSAIANTTVLVLIVKRRRKTPSRIN 89


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 553 SSGDLLSIFT-ACSLIFSMASLDAVLTALIRTRG*TPSSTN 434
           + G  LSI   +  ++FS  +   VL  +++ R  TPS  N
Sbjct: 49  NEGHQLSIIVYSILMVFSAIANTTVLVLIVKRRRKTPSRIN 89


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +3

Query: 705 GPRWSS*XTLSWYPVWXFKK 764
           G +WS    L W  VW  K+
Sbjct: 705 GGKWSCDCDLGWVEVWERKR 724


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 188 LSTCCRCGQNHP 223
           L TC RC  N+P
Sbjct: 512 LQTCVRCPNNYP 523


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,854
Number of Sequences: 336
Number of extensions: 4034
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25134219
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)