Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_F15
         (954 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5DB80 Cluster: Putative uncharacterized protein; n=1; ...    35   3.5  
UniRef50_Q2B8Q9 Cluster: Putative uncharacterized protein; n=1; ...    33   8.1  

>UniRef50_A5DB80 Cluster: Putative uncharacterized protein; n=1;
            Pichia guilliermondii|Rep: Putative uncharacterized
            protein - Pichia guilliermondii (Yeast) (Candida
            guilliermondii)
          Length = 2224

 Score = 34.7 bits (76), Expect = 3.5
 Identities = 20/52 (38%), Positives = 31/52 (59%)
 Frame = -3

Query: 466  DYRR*LLAIARHQALSSFVISSKIVECFTTFLSHFRLFFLEHSSSGTLFLGV 311
            DYRR LL   R + + + ++ ++IV  F   L H+RLFF+ + +   LFL V
Sbjct: 929  DYRRHLLY--RFECVYTVILLAEIVIRFAMHLPHWRLFFVSNRNCFDLFLAV 978


>UniRef50_Q2B8Q9 Cluster: Putative uncharacterized protein; n=1;
           Bacillus sp. NRRL B-14911|Rep: Putative uncharacterized
           protein - Bacillus sp. NRRL B-14911
          Length = 290

 Score = 33.5 bits (73), Expect = 8.1
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +3

Query: 72  QWTVRXLASFQVRVWQXXVAIGSSANLMXQRFFXQVSSALVLNKSNIRHKRXNC 233
           QWT   LA+FQ   W   V  G + NL  Q    +V   ++ ++  IR    +C
Sbjct: 181 QWTEEELAAFQNSGWSGQVVTGVNLNLFKQAPVAEVFPDILNDQDEIRPSELSC 234


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 694,303,400
Number of Sequences: 1657284
Number of extensions: 13225226
Number of successful extensions: 30212
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 29223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30201
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 88182286632
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)