Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_F15
         (954 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    24   1.5  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    24   2.0  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   6.1  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +1

Query: 520 PPMYDFPFPSADMLKRLPHITASQTNKSIAISKLQ 624
           PP YD+  P   +L  L  I       ++ +S+L+
Sbjct: 440 PPTYDYGIPQGVVLNPLDAICNKPRKDAVCVSQLR 474


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 333 EEECSRKKSRKCERNVVKHSTILEEMTKDDNAWCR 437
           E+E ++K+ +K ++ + +  T  EE+ K    W R
Sbjct: 254 EDEDTKKEDKKKKKTIKEKYTEDEELNKTKPIWTR 288


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -2

Query: 461 PKVTPSHSTTPSIIIFRHFFQNSGMFHHI 375
           P   P HST+P++ +  +   N    H I
Sbjct: 324 PSPVPGHSTSPNLPLTHNIAHNPYPSHSI 352


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,195
Number of Sequences: 336
Number of extensions: 3633
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26892580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)