Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_F15
         (954 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      28   1.7  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    28   2.2  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   5.1  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    26   9.0  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    26   9.0  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 383 HHIPFTFPTFLSRTFFFWNLISWCRHFN 300
           HH  FT   F    FFF+   S CR F+
Sbjct: 65  HHHTFTIEAFFYWFFFFFFFFSHCRRFH 92


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 502 SDTIHPPPMYDFPFPSA-DMLKRLPHITASQTNKSIAISKLQISMLERFEKKS 657
           S  I P P YD   P+  ++ KR+ H+   ++ K +  S  + SML   ++K+
Sbjct: 176 SSNIIPTPKYDSNSPAGHELRKRMTHL-LYESYKDLGYSNAESSMLALLDEKN 227


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 8/17 (47%), Positives = 15/17 (88%)
 Frame = -2

Query: 422 IIFRHFFQNSGMFHHIP 372
           +IFRH  Q+SG+++++P
Sbjct: 165 VIFRHAMQSSGLYNNLP 181


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
            Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 422  IIFRHFFQNSGMFHHIPFTF 363
            I+ +HFF++    H IPF F
Sbjct: 1024 IVVQHFFKDLSRLHDIPFYF 1043


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 563 FSISALGNGKSYIGGGCI 510
           F IS +GN     GGGCI
Sbjct: 644 FGISGMGNHLQIFGGGCI 661


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,956,895
Number of Sequences: 5004
Number of extensions: 58690
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)