Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_F15
         (954 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49936-2|CAA90181.1|  586|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AY834228-1|AAV91314.1|  589|Caenorhabditis elegans Toll and inte...    30   2.1  
Z35663-12|CAA84736.2|  718|Caenorhabditis elegans Hypothetical p...    30   2.8  
AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily a...    30   2.8  
U97007-1|AAB52291.1|  932|Caenorhabditis elegans Glutamate recep...    29   4.9  
AF318609-1|AAK01097.1|  425|Caenorhabditis elegans ionotropic gl...    29   4.9  

>Z49936-2|CAA90181.1|  586|Caenorhabditis elegans Hypothetical
           protein F13B10.1b protein.
          Length = 586

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +1

Query: 472 SPYPLNLIFISDTIHPPPMYDFPFPSADMLKRLPHITASQTNKSIAISKLQISMLERFEK 651
           SP   N +      HPPP  +   P    LK+LP  TA      + + +  +  LERF K
Sbjct: 105 SPSSSNSMLAQIQFHPPPT-EMNSPLKTSLKKLPMKTALVIRPQMFVKENSV-QLERFRK 162

Query: 652 -KSRSF 666
            K+R F
Sbjct: 163 SKTRRF 168


>AY834228-1|AAV91314.1|  589|Caenorhabditis elegans Toll and
           interleukin 1 receptordomain protein isoform f protein.
          Length = 589

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +1

Query: 472 SPYPLNLIFISDTIHPPPMYDFPFPSADMLKRLPHITASQTNKSIAISKLQISMLERFEK 651
           SP   N +      HPPP  +   P    LK+LP  TA      + + +  +  LERF K
Sbjct: 105 SPSSSNSMLAQIQFHPPPT-EMNSPLKTSLKKLPMKTALVIRPQMFVKENSV-QLERFRK 162

Query: 652 -KSRSF 666
            K+R F
Sbjct: 163 SKTRRF 168


>Z35663-12|CAA84736.2|  718|Caenorhabditis elegans Hypothetical
           protein T04A8.15 protein.
          Length = 718

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 318 RNKVPEEECSRKKSRKCERNVVKHSTILEEMTKDDNAWCRAMARSHL 458
           R  +  + C  K+S K +    K  T+ E + KDD  + +  +++HL
Sbjct: 78  RRDIHVKVCKAKQSEKEKETTRKSKTLTETIEKDDQVYEKPSSKTHL 124


>AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 268 protein.
          Length = 881

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +3

Query: 300 VEMPTPRNKVPEEECSRKKSRKCERNVVKHSTILEEMTKDDNAWCRAMARSHL 458
           ++ PTPR K        KK +K +   V+ S I   + +DD+ W +    S++
Sbjct: 113 LKTPTPRPKECPTSFLPKKEKKTKTRTVQWSKINASVVQDDSVWGKLAKASNV 165


>U97007-1|AAB52291.1|  932|Caenorhabditis elegans Glutamate receptor
           family (ampa)protein 5 protein.
          Length = 932

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 391 PLFWKK*RKMIMLGVVLWLGVTFGSHVSPYPLNLIFISDTIHPP 522
           PL W+    +    + + LG+ F ++V+PY  NL F   T H P
Sbjct: 564 PLSWQIWTAIATSIITVTLGMYFVANVTPYEWNLNFSCCTAHEP 607


>AF318609-1|AAK01097.1|  425|Caenorhabditis elegans ionotropic
           glutamate receptor GLR-5 protein.
          Length = 425

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 391 PLFWKK*RKMIMLGVVLWLGVTFGSHVSPYPLNLIFISDTIHPP 522
           PL W+    +    + + LG+ F ++V+PY  NL F   T H P
Sbjct: 124 PLSWQIWTAIATSIITVTLGMYFVANVTPYEWNLNFSCCTAHEP 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,425,156
Number of Sequences: 27780
Number of extensions: 334457
Number of successful extensions: 853
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2475644248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)