Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_F12
(890 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.5
AL033514-8|CAA22097.2| 715|Caenorhabditis elegans Hypothetical ... 31 1.5
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 1.9
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 1.9
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 1.9
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 29 5.9
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 29 5.9
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 7.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 7.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 7.8
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 448 KPPPPXXXGXFFXGPXPXPPXKXPGP 525
+PPPP G + P P PP + PGP
Sbjct: 286 RPPPPPSSG-MWPPPPPPPPGRTPGP 310
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 448 KPPPPXXXGXFFXGPXPXPPXKXPGP 525
+PPPP G + P P PP + PGP
Sbjct: 296 RPPPPPSSG-MWPPPPPPPPGRTPGP 320
>AL033514-8|CAA22097.2| 715|Caenorhabditis elegans Hypothetical
protein Y75B8A.8 protein.
Length = 715
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 535 PKXGGXGFXXGXXXXGPKKKXPXPXGGGV 449
P GG G G GP ++ P P GGGV
Sbjct: 10 PMYGGAGGGGGGPPRGPPQQPPQPQGGGV 38
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +1
Query: 406 PXPGGXXXXFXXXKKPPPPXXXGXFFXGPXPXPP 507
P PGG PPPP GP P PP
Sbjct: 730 PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP 763
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 451 PPPPXXXGXFFXGPXPXPP 507
PPPP G F GP P PP
Sbjct: 771 PPPPPPPGGFKGGPPPPPP 789
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +1
Query: 406 PXPGGXXXXFXXXKKPPPPXXXGXFFXGPXPXPP 507
P PGG PPPP GP P PP
Sbjct: 730 PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP 763
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 451 PPPPXXXGXFFXGPXPXPP 507
PPPP G F GP P PP
Sbjct: 771 PPPPPPPGGFKGGPPPPPP 789
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +1
Query: 406 PXPGGXXXXFXXXKKPPPPXXXGXFFXGPXPXPP 507
P PGG PPPP GP P PP
Sbjct: 313 PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP 346
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 451 PPPPXXXGXFFXGPXPXPP 507
PPPP G F GP P PP
Sbjct: 354 PPPPPPPGGFKGGPPPPPP 372
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +1
Query: 451 PPPPXXXGXFFXGPXPXPPXKXPGPRXLG 537
PPPP G + P P PP GP G
Sbjct: 42 PPPPPCGGGYEAPPPPPPPSYAGGPSYAG 70
>Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical
protein T04F8.8 protein.
Length = 165
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/67 (26%), Positives = 23/67 (34%)
Frame = -1
Query: 725 NXGXXFFXFFXGGGXXGKTPXKGPFXVXGPFXALFXKIFXRGXPXXXGKXXXPPXGXXKP 546
N G F + GGG G GP G + + G G PP +P
Sbjct: 47 NNGGGFNNYGNGGGFGGNNYNNGPPPFDGGYNRPYGGGGGGGYGRPQGYVPPPPPPPTQP 106
Query: 545 XPXPKXR 525
P P+ R
Sbjct: 107 EPEPEPR 113
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +1
Query: 406 PXPGGXXXXFXXXKKPPPPXXXGXFFXGPXPXPPXKXPGP 525
P P G KPPPP F G P P + GP
Sbjct: 727 PPPQGIPPMGFDPNKPPPPMFQQGFNAGAPPPPFGRGAGP 766
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/64 (25%), Positives = 18/64 (28%)
Frame = +2
Query: 503 PPXKXXAPGFWXGGXVXXPPXGGXXXXPKXGGXPXKKFXKKGPXKXXKPKKXPXGGFFXK 682
PP +P G PP G P+ G P P P G
Sbjct: 240 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 299
Query: 683 XPPP 694
PPP
Sbjct: 300 PPPP 303
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/64 (25%), Positives = 18/64 (28%)
Frame = +2
Query: 503 PPXKXXAPGFWXGGXVXXPPXGGXXXXPKXGGXPXKKFXKKGPXKXXKPKKXPXGGFFXK 682
PP +P G PP G P+ G P P P G
Sbjct: 261 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 320
Query: 683 XPPP 694
PPP
Sbjct: 321 PPPP 324
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/64 (25%), Positives = 18/64 (28%)
Frame = +2
Query: 503 PPXKXXAPGFWXGGXVXXPPXGGXXXXPKXGGXPXKKFXKKGPXKXXKPKKXPXGGFFXK 682
PP +P G PP G P+ G P P P G
Sbjct: 246 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 305
Query: 683 XPPP 694
PPP
Sbjct: 306 PPPP 309
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,068,245
Number of Sequences: 27780
Number of extensions: 169375
Number of successful extensions: 483
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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